View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_high_36 (Length: 330)
Name: NF5907_high_36
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_high_36 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 14 - 330
Target Start/End: Original strand, 47060619 - 47060935
Alignment:
| Q |
14 |
atatcaataagcatagtaagaagttacacaacaacacaacttcaatctaccgtgcaacgtttgatgtagatggaaacttgagattgtatgagcaccaatt |
113 |
Q |
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| T |
47060619 |
atatcaataagcatagtaagaagttacacaacaacacaacttcaatctaccgtgcaacgtttgatgtagatggaaacttgagattgtatgagcaccaatt |
47060718 |
T |
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| Q |
114 |
tgactttgagagcaagaatagctcgcgtgtggtaatcttgtggcaagcacttaatgacacttgtcaagtgaaggggttttgtgggttgaacagttattgc |
213 |
Q |
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| T |
47060719 |
tgactttgagagcaagaatagctcgcgtgtggtaatcttgtggcaagcacttaatgacacttgtcaagtgaaggggttttgtgggttgaacagttattgc |
47060818 |
T |
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| Q |
214 |
tccttcaatatgagcggtgatgctgtatgcaaatgttatcctggtttcatcccttccaacactaaaagcgtgcctatagactgcgtacagacgcatagca |
313 |
Q |
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| T |
47060819 |
tccttcaatatgagcggtgatgctgtatgcaaatgttatcctggtttcatcccttccaacactaaaagcgtgcctatagactgcgtacagacgcatagca |
47060918 |
T |
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| Q |
314 |
aagatgactgtgaaagc |
330 |
Q |
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| T |
47060919 |
aagatgactgtgaaagc |
47060935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 43 - 330
Target Start/End: Complemental strand, 47081109 - 47080813
Alignment:
| Q |
43 |
aacaacacaacttcaatctaccgtgcaacgtttgatgtagatggaaacttgagattgtatgagcaccaatttgactttgagagcaagaatagctcgcgtg |
142 |
Q |
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| T |
47081109 |
aacaacgcaacttcaatctaccgtgcaacacttgacgtagatggaaacttgagattgtatgaacaccaatttcattttgaaggcaacaatagctctcgtg |
47081010 |
T |
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| Q |
143 |
tggtaatcttgtggcaagcacttaatgacacttgtcaagtgaaggggttttgtgggttgaacagttattgctccttcaatatgagcggtgatgctgtatg |
242 |
Q |
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| T |
47081009 |
tggtaatgttgtggaaagcacttaatgagacatgtttagtgaaggggttttgtgggttgaacagttattgcacttccaacatcagcagtgatgctgtctg |
47080910 |
T |
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| Q |
243 |
caaatgttatcctggtttcatcccttccaacactaaaag---------cgtgcctatagactgcgtacagacgcatagcaaagatgactgtgaaagc |
330 |
Q |
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| T |
47080909 |
caagtgttatcctggtttcatcctttccgagaccaaaagtaatcctaaattgcctatggactgcgtacagaaacatagcaaagatgactgtgaaagc |
47080813 |
T |
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