View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_high_39 (Length: 319)
Name: NF5907_high_39
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 46687522 - 46687210
Alignment:
| Q |
1 |
ccctaccttcgtgtacacaaagacggaaccatcgaaagatacgccggcattgccgtcgttcctcccggcatcgatcctcatacaaacgttaactccaaag |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46687522 |
ccctaccttcgtgtacacaaagacggaaccgtcgaaagatatgccggcattgccgtcgttcctcccggcatcgatcctcatacaaacgttatctccaaag |
46687423 |
T |
|
| Q |
101 |
acatcacaatcatcccagaaaccggtgtcacagcaagactatattctccaaacaattcaacttcagaaaagcttccattgattgtatacttccatggtgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46687422 |
acatcacaatcatcccagaaaccggtgtcacagcaagactatattctccaaacaattcaacttcagaaaagcttccattgattgtatacttccatggtgg |
46687323 |
T |
|
| Q |
201 |
agcctattgtatagcttcatcctccgaccctgtttaccataactccctcaacaaacttgtagcagaagcaaacatcatagctatctcggttaattaccgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46687322 |
agcctattgtatagcttcatcctccgaccctgtttaccataactccctcaacaaacttgtagcagaagcaaacatcatagctatctcggttaattaccgg |
46687223 |
T |
|
| Q |
301 |
ttagcaccggaac |
313 |
Q |
| |
|
||||||||||||| |
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| T |
46687222 |
ttagcaccggaac |
46687210 |
T |
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