View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5907_high_4 (Length: 683)

Name: NF5907_high_4
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5907_high_4
NF5907_high_4
[»] chr3 (1 HSPs)
chr3 (18-675)||(50234727-50235384)


Alignment Details
Target: chr3 (Bit Score: 650; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 18 - 675
Target Start/End: Original strand, 50234727 - 50235384
Alignment:
Q  18 actctccacgttcagcaaatacctaaccgaaaccaagttggctgaacaaataaacagtggtaaagccgttaccattcttgcccttgacaacaaagctatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50234727 actctccacgttcagcaaatacctaaccgaaaccaagttggctgaacaaataaacagtggtaaagccgttaccattcttgcccttgacaacaaagctatt 50234826  T
Q  118 gcttctctttctggtaaaccaattgacgccattaaagccgttattgggacccatgttatacctgaattctacgatgagaaaaaactttttgatatcattg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50234827 gcttctctttctggtaaaccaattgacgccattaaagccgttattgggacccatgttatacctgaattctacgatgagaaaaaactttttgatatcattg 50234926  T
Q  218 gaagccatgcacaattgcctacactttcaaccgctccaggtttagccgctaaaatctacgtgtcacttattaatgaaggtgaaatggcatttagttctgc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50234927 gaagccatgcacaattgcctacactttcaaccgctccaggtttagccgctaaaatctacgtgtcacttattaatgaaggtgaaatggcatttagttctgc 50235026  T
Q  318 tgttgaaggctcaaccttcgatgccacgcttgttcaaagcactgaggctgaaccaggcgttgtttcaattctccaggtttcacagccaattgttaaggtt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50235027 tgttgaaggctcaaccttcgatgccacgcttgttcaaagcactgaggctgaaccaggcgttgtttcaattctccaggtttcacagccaattgttaaggtt 50235126  T
Q  418 ggtgcttcagctccggcaactccagcaacactatcaaaaccagcaacacctgcagctgtgtcaacatccagtgccggtgaggttgcaacaccagcagctg 517  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50235127 ggtgcttcagctccagcaactccagcaacactatcaaaaccagcaacacctgcagctgtgtcaacatccagtgccggtgaggttgcaacaccagcagctg 50235226  T
Q  518 tgccaacatccggtgccggtcaggttacaacaccagcagcatcaccttctgtggtgattgctgagtcacctgagagttttggtgatgcacctgctcctgc 617  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50235227 tgccagcatccggtgccggtcaggttacaacaccagcagcatcaccttctgtggtgattgctgagtcacctgagagttttggtgatgcacctgctcctgc 50235326  T
Q  618 tcctagtgcctcttctcgtgccacattcagattcattggtgctgttattgcctttgct 675  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50235327 tcctagtgcctcttctcgtgccacattcagattcattggtgctgttattgcctttgct 50235384  T

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