View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_high_41 (Length: 316)
Name: NF5907_high_41
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 16459802 - 16460102
Alignment:
| Q |
1 |
cataggtgcctaagttaattttctattttggcctagatggaagattaattgcaccaaactaaaagttccaaataaagcaaacaccatata----aatcat |
96 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
16459802 |
cataggtgcataagttaattttctattttggcctagatggaagattaattgcaccaaactaaaagttccaaataaagcaaacaccatatatgtaaatcat |
16459901 |
T |
|
| Q |
97 |
gccaaagaagagtaacacatcgacaaattaaagtgaagtaggatattaataataatctggaaaattcaaacttcataaacataataacaacaatcgattt |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16459902 |
gccaaagaagagtaacacatcgacaaattaaagtgaagtaggatattaataataatctggaaaattcaaacttcataaacataataacaacaatcgattt |
16460001 |
T |
|
| Q |
197 |
-ctttaataactggtacattaaaatggaaaatcattatcattctatgattagttctcccaatgtgaaagcagcgaagtaaagaaatacttctctccattt |
295 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16460002 |
actttaatgactggtacattaaaatggaaaatcattatcattctacgattagttctcccaatgtgaaagcagcgaagtaaagaaatacttctctccattt |
16460101 |
T |
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| Q |
296 |
g |
296 |
Q |
| |
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| |
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| T |
16460102 |
g |
16460102 |
T |
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