View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_high_43 (Length: 303)
Name: NF5907_high_43
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_high_43 |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 5 - 290
Target Start/End: Complemental strand, 2406902 - 2406620
Alignment:
| Q |
5 |
tgtcgaagaatattgcggcgttaggccgggccttaaaacagcagttccacatgattacttggatacaagtcaaggaagtggttgggatcagtttctaagg |
104 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2406902 |
tgtcgaagattattgtggcgttaggccgggccttaaaacagcagttccacatgattacttggatacaagtcaaggaagtggttgggatcagtttctaagg |
2406803 |
T |
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| Q |
105 |
aatactgctgacaaagagttaagacaacaatctactgaagctggtgcatgataataaattcttgttcgagatagcaaatagaatagaatgttcgctattt |
204 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2406802 |
aatactgctgacgaagagttaagacaacaatctactgaagctggtgcatgataataaattcttgttcgagatagcaaatagaatagtatgttcgctattt |
2406703 |
T |
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| Q |
205 |
ttatattgtttactgagattttaaacaaagaaggggggaataaagcttgtgtttgaaacagttctaccctattgaggatgtttttg |
290 |
Q |
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| T |
2406702 |
ttatattgtttactgagattttaaaca---aaggggggaataaagcttgtgtttgaaacagttctaccctattgaggatgtttttg |
2406620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 5 - 283
Target Start/End: Original strand, 15083858 - 15084136
Alignment:
| Q |
5 |
tgtcgaagaatattgcggcgttaggccgggccttaaaacagcagttccacatgattacttggatacaagtcaaggaagtggttgggatcagtttctaagg |
104 |
Q |
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||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15083858 |
tgtcgaagattattgcggtgttaggccgggtcttaaaacagcagttccacatgattacttggatacaagtcaaggaagtggttgggatcagtttctaagg |
15083957 |
T |
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| Q |
105 |
aatactgctgacaaagagttaagacaacaatctactgaagctggtgcatgataataaattcttgttcgagatagcaaatagaatagaatgttcgctattt |
204 |
Q |
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| T |
15083958 |
aatgctgctgacgaagagttaagacaacaatctactgaagccggtgcatgataataaattcttgttcgagatagcaaatagaatagtatgtttgctattt |
15084057 |
T |
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| Q |
205 |
ttatattgtttactgagattttaaacaaagaaggggggaataaagcttgtgtttgaaacagttctaccctattgaggat |
283 |
Q |
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| T |
15084058 |
ttatattttttattgagattttaaagaaacaaggggggaataaagcttgtgtttgaaacagttctaccctattgaggat |
15084136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 283
Target Start/End: Complemental strand, 9459 - 9179
Alignment:
| Q |
5 |
tgtcgaagaatattgcggcgttaggccgggccttaaaacagcagttccacatgattacttggatacaagtcaaggaagtggttgggatcagtttctaagg |
104 |
Q |
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||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9459 |
tgtcgaagattattgcggtgttaggccgggtcttaaaacagcagttccacatgattacttggatacaagtcaaggaagtggttgggatcagtttctaagg |
9360 |
T |
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| Q |
105 |
aatactgctgacaaagagttaagacaacaatctactgaagctggtgcatgataataaattcttgttcgagatagcaaatagaatagaatgttcgctattt |
204 |
Q |
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||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
9359 |
aatgctgctgacgaagagttaagacaacaatctactgaagccggtgcatgataataaattcttgttcgagatagcaaatagaatagtatgtttgctattt |
9260 |
T |
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| Q |
205 |
ttatattgtttactgagattttaaacaaagaa-ggggggaat-aaagcttgtgtttgaaacagttctaccctattgaggat |
283 |
Q |
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||||||| |||| |||||||||||| ||| || ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9259 |
ttatattttttattgagattttaaagaaacaagggggggaataaaagcttgtgtttgaaacagttctaccctattgaggat |
9179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 21477891 - 21477801
Alignment:
| Q |
17 |
ttgcggcgttaggccgggccttaaaacagcagttccacatgattacttggatacaagtcaaggaagtggttgggatcagtttctaaggaat |
107 |
Q |
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|||||| |||||||| ||||||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||||| |||||||||||| |
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| T |
21477891 |
ttgcggtgttaggccaggccttaaaacagcagttccatatgattacttggataccagttcagggagtggttgggatcaatttctaaggaat |
21477801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 30597562 - 30597514
Alignment:
| Q |
30 |
ccgggccttaaaacagcagttccacatgattacttggatacaagtcaag |
78 |
Q |
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| T |
30597562 |
ccgggccttaaaatagcagttctacatgattacttggatacaagtcaag |
30597514 |
T |
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