View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5907_high_58 (Length: 257)

Name: NF5907_high_58
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5907_high_58
NF5907_high_58
[»] chr4 (13 HSPs)
chr4 (18-249)||(27566159-27566390)
chr4 (18-236)||(27425513-27425731)
chr4 (43-182)||(27412398-27412536)
chr4 (35-245)||(27415337-27415552)
chr4 (33-245)||(27420116-27420336)
chr4 (43-234)||(27570272-27570465)
chr4 (32-185)||(27563628-27563770)
chr4 (76-145)||(27557259-27557329)
chr4 (81-134)||(27516917-27516970)
chr4 (76-134)||(27466588-27466646)
chr4 (47-140)||(27422949-27423044)
chr4 (76-134)||(27473661-27473719)
chr4 (76-134)||(27500644-27500702)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 27566390 - 27566159
Alignment:
Q  18 ctttgtagattctttctccttcacaaatcattcaagtagccaacagtttttcaatattcttttatctatatatattcatggttacaagcatttaggacca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27566390 ctttgtagattctttctccttcacaaatcattcaagtagccaacagtttttcaatattcttttatctatatatattcatggttacaagcatttaggacca 27566291  T
Q  118 acacaaatcattcacatcctaaagcattccaatttccaaaaacttgcttcttgcttacaagtcttttttaaaaccaatttttctcaagtttgaacgcata 217  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27566290 acacaaatcattcacatcctaaaccattccaatttccaaaaacttgcttcttgcttacaagtcttttttaaaaccaatttttctcaagtttgaacgcata 27566191  T
Q  218 cagcaatgggttttcgtttccctagtattatc 249  Q
    ||||||||||||||||||||||||||||||||    
T  27566190 cagcaatgggttttcgtttccctagtattatc 27566159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 27425513 - 27425731
Alignment:
Q  18 ctttgtagattctttctccttcacaaatcattcaagtagccaacagtttttcaatattcttttatctatatatattcatggttacaagcatttaggacca 117  Q
    ||||||||||| |||||| ||||| | ||||||||||||||||||||||||| ||||||| ||||||||||||||| | || ||||||||||||||||||    
T  27425513 ctttgtagattatttctcgttcactagtcattcaagtagccaacagtttttccatattctcttatctatatatattaaaggctacaagcatttaggacca 27425612  T
Q  118 acacaaatcattcacatcctaaagcattccaatttccaaaaacttgcttcttgcttacaagtc-ttttttaaaaccaatttttctcaagtttgaacgcat 216  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| |||||||||||  | | ||||||||||| ||| |||    
T  27425613 acacaaatcattcacatcctaaaccattccaattt-caaaaacttgcttcttgcttacaggtctttttttaaaactgaatattctcaagttttaacacat 27425711  T
Q  217 acagcaatgggttttcgttt 236  Q
    ||| ||||||||||||||||    
T  27425712 acaacaatgggttttcgttt 27425731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 43 - 182
Target Start/End: Original strand, 27412398 - 27412536
Alignment:
Q  43 aatcattcaagtagccaacagtttttcaatattcttttatctatatatattcatggttacaagcatttaggaccaacacaaatcattcacatcctaaagc 142  Q
    ||||||||||||||||||  |||| ||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||| |    
T  27412398 aatcattcaagtagccaatggtttctcaatattcttttatctatatatattcatggctgcaagcatttaggacaaacacaaatcattcacatcctaaacc 27412497  T
Q  143 attccaatttccaaaaacttgcttcttgcttacaagtctt 182  Q
    |||  ||||| |||||||||||||||||||||||||||||    
T  27412498 attttaattt-caaaaacttgcttcttgcttacaagtctt 27412536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 35 - 245
Target Start/End: Original strand, 27415337 - 27415552
Alignment:
Q  35 ccttcacaaatcattcaagtagccaacagtttttcaatat----tcttttatctatatatattcatggttacaagcatttaggaccaacacaaatcattc 130  Q
    ||||||| ||||||||||||||||||| |||| |||||||    ||||| |||||| |||||||| || ||||||||||||||||||||||||| |||||    
T  27415337 ccttcaccaatcattcaagtagccaactgtttctcaatatgaattctttcatctatttatattcaaggctacaagcatttaggaccaacacaaaacattc 27415436  T
Q  131 acatcctaaagcattccaatttccaaaaacttgcttcttgcttacaa---gtctt-ttttaaaaccaatttttctcaagtttgaacgcatacagcaatgg 226  Q
    ||||||||||||||| || ||| |||||||||| || |||| |||||    |||| ||||||||| | || ||||||||||| ||| |||||| ||||||    
T  27415437 acatcctaaagcatt-cagttttcaaaaacttg-ttattgc-tacaatttatcttattttaaaacaatttcttctcaagttttaacacatacaacaatgg 27415533  T
Q  227 gttttcgtttccctagtat 245  Q
    |||||||| ||||||||||    
T  27415534 gttttcgtgtccctagtat 27415552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 33 - 245
Target Start/End: Original strand, 27420116 - 27420336
Alignment:
Q  33 ctccttcacaaatcattcaagtagccaacagtttttcaatatt----cttttatctatatatattcatggttacaagcatttaggaccaacacaaatcat 128  Q
    ||||||||| |||||||||||||| |||| |||| |||| |||    |||  ||||||||||||||| || ||||||||||||||||||||||||| |||    
T  27420116 ctccttcaccaatcattcaagtaggcaactgtttctcaaaattagttcttacatctatatatattcaaggctacaagcatttaggaccaacacaaaacat 27420215  T
Q  129 tcacatcctaaagcattccaatttccaaaaacttgcttcttgcttacaagtctttttta-----aaaccaatttttctcaagtttgaacgcatacagcaa 223  Q
    ||||||||||||||||||  |||| |||||||||| |  ||||||| |||| | |||||     |||||| || |||| |||||| ||| |||||| |||    
T  27420216 tcacatcctaaagcattcagattt-caaaaacttggtctttgcttaaaagtttattttatttttaaaccatttcttctaaagttttaacacatacaacaa 27420314  T
Q  224 tgggttttcgtttccctagtat 245  Q
    ||||||||||||||||| ||||    
T  27420315 tgggttttcgtttccctggtat 27420336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 43 - 234
Target Start/End: Complemental strand, 27570465 - 27570272
Alignment:
Q  43 aatcattcaagtagccaacagtttttcaat-attcttttatctatatatattcatggttacaagcatttaggaccaacacaaatcattcacatcctaaag 141  Q
    ||||||||||||||||||  |||| ||||| ||||||||| |||||||||||||||  | ||||||||||| ||||||||||||||||||||||||||||    
T  27570465 aatcattcaagtagccaatggtttctcaattattcttttaactatatatattcatgactgcaagcatttagaaccaacacaaatcattcacatcctaaag 27570366  T
Q  142 cattccaatttccaaaaacttgcttcttgcttacaagtctt--ttttaaaaccaatttttctcaagtttgaacgcatacagcaatgggttttcgt 234  Q
    ||||| ||| |  ||||||||| || ||||||| |||| ||  ||| ||||||| || ||||||||| | ||| ||||||  |||||||||||||    
T  27570365 cattcaaatct-gaaaaacttggttattgcttaaaagtttttatttaaaaaccatttattctcaagtgttaacacatacaaaaatgggttttcgt 27570272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 32 - 185
Target Start/End: Complemental strand, 27563770 - 27563628
Alignment:
Q  32 tctccttcacaaatcattcaagtagccaacagtttttcaatattcttttatctatatatattcatggttacaagcatttaggaccaacacaaatcattca 131  Q
    |||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||         ||||  || |||||||||    
T  27563770 tctccttcaccaatcattcaagtagccaatagttttgcaatattcttttatctatatatattcatggttgcaa--------tacca--actaatcattca 27563681  T
Q  132 catcctaaagcattccaatttccaaaaacttgcttcttgcttacaagtcttttt 185  Q
    ||||||||||||||| ||||| |||||||||| || ||||||| |||| |||||    
T  27563680 catcctaaagcattcaaattt-caaaaacttggttattgcttaaaagttttttt 27563628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 145
Target Start/End: Original strand, 27557259 - 27557329
Alignment:
Q  76 cttttatctatatatattcatggttacaagcatttaggaccaacac-aaatcattcacatcctaaagcatt 145  Q
    |||| |||||||||||||||| ||| |||||||||||||||||||| |||||||||||| |||||||||||    
T  27557259 ctttcatctatatatattcatagttgcaagcatttaggaccaacacaaaatcattcacaacctaaagcatt 27557329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 27516970 - 27516917
Alignment:
Q  81 atctatatatattcatggttacaagcatttaggaccaacacaaatcattcacat 134  Q
    |||||||||||||||||| | ||||||||||| |||||||||||||||||||||    
T  27516970 atctatatatattcatggctgcaagcatttagcaccaacacaaatcattcacat 27516917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 27466588 - 27466646
Alignment:
Q  76 cttttatctatatatattcatggttacaagcatttaggaccaacacaaatcattcacat 134  Q
    |||| |||||||||||||||||| | ||||| ||||| |||||||||||||||||||||    
T  27466588 ctttcatctatatatattcatggctgcaagcctttagcaccaacacaaatcattcacat 27466646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 27422949 - 27423044
Alignment:
Q  47 attcaagtagccaacagtttttcaatattcttttatctatatata-ttcat-ggttacaagcatttaggaccaacacaaatcattcacatcctaaa 140  Q
    ||||||||||||||  |||| |||| ||||||||||||||||| | || || ||||| || ||||||| |||||| | ||||||||||||||||||    
T  27422949 attcaagtagccaatggtttctcaaaattcttttatctatataaattttataggttagaaccatttagaaccaactctaatcattcacatcctaaa 27423044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 27473661 - 27473719
Alignment:
Q  76 cttttatctatatatattcatggttacaagcatttaggaccaacacaaatcattcacat 134  Q
    |||| |||||||||||||||||| | ||||| ||||| | |||||||||||||||||||    
T  27473661 ctttcatctatatatattcatggctgcaagcctttagcatcaacacaaatcattcacat 27473719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 27500702 - 27500644
Alignment:
Q  76 cttttatctatatatattcatggttacaagcatttaggaccaacacaaatcattcacat 134  Q
    |||| |||||||||||| ||||||| ||||| ||||| ||||||| |||||||||||||    
T  27500702 ctttcatctatatatatccatggttgcaagcctttagcaccaacaaaaatcattcacat 27500644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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