View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_high_6 (Length: 615)
Name: NF5907_high_6
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 14 - 596
Target Start/End: Complemental strand, 42199033 - 42198451
Alignment:
| Q |
14 |
aagaatatcagaggttgaaaggatacagacattgtacagttcggttgtagatgaagccagtcattccgggcctcacattgctgagagtaaagggcgtaga |
113 |
Q |
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| T |
42199033 |
aagaatatcagaggttgaaaggatacagacattgtacagttcggttgtagatgaagccagtcattccgggcctcacattgctgagagtaaagggcgtaga |
42198934 |
T |
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| Q |
114 |
atggaaatatctctagtgccagaaaaaagccagtcactctcattcaataaaacatctcaatcccatcaaactacccaaatcacatcatcgagtcaagcca |
213 |
Q |
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| T |
42198933 |
atggaaatatctctagtgccagaaaaaagccagtcactctcattcaataaaacatctcaatcccatcaaactacccaaatcacatcatcgagtcaagcca |
42198834 |
T |
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| Q |
214 |
ttaattctgcttgggaaattgctgttgcaactaatcaacttcattctgggacttcatcgtcgcgaagtgatgcagcatgtttatcaagtagagttgggtc |
313 |
Q |
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| T |
42198833 |
ttaattctgcttgggaaattgctgttgcaactaatcaacttcattccgggacttcatcgtcgcgaagtgatgcagcatgtttatcaagtagagttgggtc |
42198734 |
T |
|
| Q |
314 |
tcaatcacagcgtgtggtacctgttcaaccagaaaagcaaacccctgcatcttctccatctctttctaatacagctgaaagcaaattagagttgtctgta |
413 |
Q |
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| T |
42198733 |
tcaatcacagcgtgtggtacctgttcaaccagaaaagcaaacccctgcatcttctccatctctttctaatacagctgaaagcaaattagagttgtctgta |
42198634 |
T |
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| Q |
414 |
aatgcttcttcacctaaaaagttaggtaataaagtggctgtgtcaaattctggacggaaaggtaggttgcagacatcatcttcttcatctacttctgtta |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42198633 |
aatgcttcttcacctaaaaagttaggtaataaagtggctgtgtcaaattctggacggaaaggtaggttgcagacatcatcttcttcatctacttctgtta |
42198534 |
T |
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| Q |
514 |
atggcagcagggttaacaaacaaccacaccatacccctcgcacaattaaaatggtcattaagaacaaaagtccgagtaagaag |
596 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42198533 |
atggcagcagggttaacaaacaaccacaccatacctctcgcacaattaaaatggtcattaagaacaaaagtccgagtaagaag |
42198451 |
T |
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