View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_high_61 (Length: 252)
Name: NF5907_high_61
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_high_61 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 44719492 - 44719725
Alignment:
| Q |
1 |
ttgtcgtaatttattttttgaaaactctaattttgattttaatcggagacaagtagatgaggtcactcatgccttacttagcaaggataacaaagcacaa |
100 |
Q |
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| T |
44719492 |
ttgtcgtaatttattttttgaaaactctaattttgattttaattggagacaagtagatgaggtcacttatgccttacttagcaaggataacaaagcacaa |
44719591 |
T |
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| Q |
101 |
taagtcaactaattcattgaatcatagtcatccaacttgtcattgtactaaatcattaaattacaaggaaagctgggtctctaactgtatatgtaccaac |
200 |
Q |
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| T |
44719592 |
taagtcaactaattcattgaatcatagtcatccaacttgtcattgtactaaatcattaaattacaaggaaagctgggtctgtaactgtatatgtaccaac |
44719691 |
T |
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| Q |
201 |
ttgaacatgcccttgttcagtataagttactgct |
234 |
Q |
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| T |
44719692 |
ttgaacatgcccttgttcagtataagttactgct |
44719725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 43170998 - 43170952
Alignment:
| Q |
103 |
agtcaactaattcattgaatcatagtcatccaacttgtcattgtact |
149 |
Q |
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| T |
43170998 |
agtcaactaattcattaaatcatagtcatccaacttgtcattgtact |
43170952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 43170888 - 43170819
Alignment:
| Q |
161 |
ttacaaggaaagctgggtctctaactgtatatgtaccaacttgaacatgcccttgttcagtataagttac |
230 |
Q |
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| T |
43170888 |
ttacaaggtaagctgggtctgtaattgtatttggaccaactcgaacatgtccttgttcaatataagttac |
43170819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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