View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5907_high_73 (Length: 238)
Name: NF5907_high_73
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_high_73 |
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Alignment Details
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 2013576 - 2013797
Alignment:
| Q |
1 |
agaaaataaactaattattacactcttttgtgccttatttcatttcgttaccaacatcttaaagtacaaatccatagttgcaaggttacgtgaaattacn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
2013576 |
agaaaataaactaattattacactctttagtgccttatttcatttcgttaccaacatcttagagtacaaatccatagttgcaaggtt-cgtgaaattaca |
2013674 |
T |
|
| Q |
101 |
nnnnnnnnnnnnnnnnnnncatacaattattgggtgtcaacacaataactaaatggcaactatagaaattctagcaagagttatactgcatagannnnnn |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | |||||||||||| |
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|
| T |
2013675 |
aaaagaaaaataaataaaacatacaattattgggtgtcaacacaatgactaaatgacaactatagaaattctagcaagattaatactgcatagatttttt |
2013774 |
T |
|
| Q |
201 |
nactaatataagagttccttctt |
223 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
2013775 |
tactaatataagagttcattctt |
2013797 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1970406 - 1970626
Alignment:
| Q |
1 |
agaaaataaactaattattacactcttttgtgccttatttcatttcgttaccaacatcttaaagtacaaatccatagttgcaaggttacgtgaaattacn |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
1970406 |
agaaaataaactaattattacactatttggtgccttgtttcatttcgttaccaacatcttagagtacaaatccatagttgcaaggtt-cgtgaaattaaa |
1970504 |
T |
|
| Q |
101 |
nnnnnnnnnnnnnnnnnnncatacaattattgggtgtcaacacaataactaaatggcaactatagaaattctagcaagagttatactgcatagannnnnn |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1970505 |
aaaagaaaaataaataaaacatacaattattgggtgtctacacaataactaaatggcaactatagaaattctagcaagagttatactgcataga-ttttt |
1970603 |
T |
|
| Q |
201 |
nactaatataagagttccttctt |
223 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
1970604 |
tactaatataagagttccttctt |
1970626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 32007965 - 32008001
Alignment:
| Q |
125 |
aattattgggtgtcaacacaataactaaatggcaact |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |
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|
| T |
32007965 |
aattattgggtgtcaacacaataactaaatgacaact |
32008001 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 31280388 - 31280343
Alignment:
| Q |
31 |
tgccttatttcatttcgttaccaacatcttaaagtacaaatccata |
76 |
Q |
| |
|
||||||||||||||| |||||| ||| |||||||||||||||||| |
|
|
| T |
31280388 |
tgccttatttcattttattaccatcatattaaagtacaaatccata |
31280343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 4230114 - 4230154
Alignment:
| Q |
121 |
atacaattattgggtgtcaacacaataactaaatggcaact |
161 |
Q |
| |
|
||||||||||| |||| |||||||| ||||||||||||||| |
|
|
| T |
4230114 |
atacaattattaggtgccaacacaacaactaaatggcaact |
4230154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 16715412 - 16715457
Alignment:
| Q |
31 |
tgccttatttcatttcgttaccaacatcttaaagtacaaatccata |
76 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| | |||||||||||| |
|
|
| T |
16715412 |
tgccttatttcatttcattaccatcatcttataatacaaatccata |
16715457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 26316120 - 26316084
Alignment:
| Q |
34 |
cttatttcatttcgttaccaacatcttaaagtacaaa |
70 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||| |
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|
| T |
26316120 |
cttatttcatttcattaccaacatcttagagtacaaa |
26316084 |
T |
|
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