View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5907_high_76 (Length: 233)

Name: NF5907_high_76
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5907_high_76
NF5907_high_76
[»] chr5 (3 HSPs)
chr5 (118-214)||(6602205-6602301)
chr5 (133-214)||(6609735-6609816)
chr5 (13-43)||(6602100-6602130)


Alignment Details
Target: chr5 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 6602205 - 6602301
Alignment:
Q  118 caacaattgagagagcttaattacattaacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatcctagaatcattagctatagctgac 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6602205 caacaattgagagagcttaattacattaacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatcctagaatcattagctatagctgac 6602301  T

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Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 6609735 - 6609816
Alignment:
Q  133 cttaattacattaacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatcctagaatcattagctatagctgac 214  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  6609735 cttaattacattgacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatccttgagtcattagctatagctgac 6609816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Original strand, 6602100 - 6602130
Alignment:
Q  13 agcacagatccatcacatccctatgtaacac 43  Q
    |||||||||||||||||||||||||||||||    
T  6602100 agcacagatccatcacatccctatgtaacac 6602130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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