View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_high_79 (Length: 217)
Name: NF5907_high_79
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_high_79 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 3 - 205
Target Start/End: Original strand, 27324418 - 27324620
Alignment:
| Q |
3 |
gtgtagatgcagacagcaaaggaattatgtatcaggtggattttgaggttgttgttttatcacgtgaattcagatcacatatacttaatttacctaacgt |
102 |
Q |
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| T |
27324418 |
gtgtagatgcaggcaacaaaggaatcatgtatcaggtggattttgaggttgttgttttatcacatgaattcagatcacatatacttaatttacctaacgt |
27324517 |
T |
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| Q |
103 |
gaattaaaatcacgtatcattcataagagtgggaaggaaacgagtaaggataattttggtattatgaataaattttaattgaatttggatgtaacttgat |
202 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27324518 |
gaattaaaatcacgtaccattcataagagtgggaaggaaatgagtaaggataattttggtattatgaataaattttaattgaatttgggtgtaacttgat |
27324617 |
T |
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| Q |
203 |
att |
205 |
Q |
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||| |
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| T |
27324618 |
att |
27324620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 28359214 - 28359415
Alignment:
| Q |
4 |
tgtagatgcagacagcaaaggaattatgtatcaggtggattttgaggttgttgttttatcacgtgaattcagatcacatatacttaatttacctaacgtg |
103 |
Q |
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||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28359214 |
tgtagatgcaggcaacaaaggaatcatgtatcaggtggattttgaggttgttgttttatcacgtgaattcagatcacatatacttaatttacctaacgtg |
28359313 |
T |
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| Q |
104 |
aattaaaatcacgtatcattcataagagtgggaaggaaacgagtaaggataattttggtattatgaataaattttaattgaatttggatgtaacttgata |
203 |
Q |
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| T |
28359314 |
aattaaaatcacgtatcattcataagagtgggaaggaaatgagtaaggataattttgatattatgaataaattttaaatgaatttgggtgtaacttgata |
28359413 |
T |
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| Q |
204 |
tt |
205 |
Q |
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|| |
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| T |
28359414 |
tt |
28359415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 3 - 205
Target Start/End: Original strand, 3500649 - 3500854
Alignment:
| Q |
3 |
gtgtagatgcagacagcaaaggaattatgtatcaggtg---gattttgaggttgttgttttatcacgtgaattcagatcacatatacttaatttacctaa |
99 |
Q |
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|||||||||||| || |||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3500649 |
gtgtagatgcaggcaacaaatgaatcatgtatcaggtggtggattttgaggttgttgttttatcacgtgaattcagatcacgtatacttaatttacctaa |
3500748 |
T |
|
| Q |
100 |
cgtgaattaaaatcacgtatcattcataagagtgggaaggaaacgagtaaggataattttggtattatgaataaattttaattgaatttggatgtaactt |
199 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
3500749 |
cgtgaattaaaatcatgtatcattcataagagtgggaaggaaatgagtaaggataattttgttattatgaataaattttaattgaatttgggtgtaactt |
3500848 |
T |
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| Q |
200 |
gatatt |
205 |
Q |
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|||||| |
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| T |
3500849 |
gatatt |
3500854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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