View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_high_80 (Length: 211)
Name: NF5907_high_80
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_high_80 |
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Alignment Details
Target: chr5 (Bit Score: 97; Significance: 7e-48; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 53 - 149
Target Start/End: Complemental strand, 34289687 - 34289591
Alignment:
| Q |
53 |
gctagatctttgctgacaattccaaaagcttcaactaatttggagttattgatatgttaatgaacctttgaaagtgttgtgtttgtttgaaacaagg |
149 |
Q |
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| T |
34289687 |
gctagatctttgctgacaattccaaaagcttcaactaatttggagttattgatatgttaatgaacctttgaaagtgttgtgtttgtttgaaacaagg |
34289591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 53 - 149
Target Start/End: Complemental strand, 34302074 - 34301978
Alignment:
| Q |
53 |
gctagatctttgctgacaattccaaaagcttcaactaatttggagttattgatatgttaatgaacctttgaaagtgttgtgtttgtttgaaacaagg |
149 |
Q |
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| T |
34302074 |
gctagatctttactgacaattccaaaagcttcaactaatttggagttattgatatgttaatgaacctttgaaagtgttgtgtttgtttgaaacaagg |
34301978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 34289754 - 34289718
Alignment:
| Q |
19 |
catcaatttacttaaagatgacgtgaaagaagaggct |
55 |
Q |
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| T |
34289754 |
catcaatttacttaaagatgacatgaaagaagaggct |
34289718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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