View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_low_10 (Length: 507)
Name: NF5907_low_10
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 17 - 494
Target Start/End: Complemental strand, 28522439 - 28521968
Alignment:
| Q |
17 |
atttcatgattatggttagttgtttatttaccttaatggagtgagtagaggagataataatgctccttgatgtgtataaaagatgatttacaatttgcat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28522439 |
atttcatgattatggttagttgtttatttaccttaatgaagtgagtagaggagataataatgctccttgatgtgtataaaagatgatttacaatttgcat |
28522340 |
T |
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| Q |
117 |
tttgctatggaacttatagaaatcctatgtctttcttgtttgaccattattcnnnnnnnnnnnaattgattcctttttacttactccatttgtcctacct |
216 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28522339 |
tttgctatggaacttatagaaatcccatgtctttcttgtttgaccattattctttttttttttaattgattcctttttacttactccatttgtcctacct |
28522240 |
T |
|
| Q |
217 |
tataaatgtattaggtctccctaaatatatttaaaaacgtgtgaatgatataaaagtacataaataattaattatgtcaacattcaacacttgtttattc |
316 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28522239 |
tatgaatgtattaggtctccctaaatatatttaaaaacgtgtgaatgatataaaagtacataaataattaattaggtcaacattcaacacttgtttattc |
28522140 |
T |
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| Q |
317 |
cttcaaacaaacaaaaaattgtaaatcacnnnnnnnnatagtcctcctattataattgagtcgacatcaatgtgtgatttatttttaaagtctttctttc |
416 |
Q |
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||| ||| |||||| |||||||||| ||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||| |
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| T |
28522139 |
ctt----aaaaaaaaaaaatgtaaatcac--ttttttatagtcctcctattataattgtgtcgacatcaatacgtgctttatttttaaagtctttctttc |
28522046 |
T |
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| Q |
417 |
aactcttattttcaagtaacttttagatcataaaaaagtcagactaaacggtaccatagtcatgttttattagccttc |
494 |
Q |
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| T |
28522045 |
aacttttattttcaagtaacttttagaccgtaataaagtcagactaaacggtaccatagtcatgttttattagccttc |
28521968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 28456454 - 28456410
Alignment:
| Q |
17 |
atttcatgattatggttagttgtttatttaccttaatggagtgag |
61 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
28456454 |
atttgatgattatggttagttgtttatttaccttgatggagtgag |
28456410 |
T |
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