View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_low_11 (Length: 498)
Name: NF5907_low_11
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 13 - 481
Target Start/End: Original strand, 40787082 - 40787550
Alignment:
| Q |
13 |
aatattatcatcaagtaaatcatagctaaaatacaatactaccaaaagccaaagattgaacatgcaaccccactcaatacggttcatcctcttgtgtaaa |
112 |
Q |
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| T |
40787082 |
aatattatcatcaagtaaattatagctaaaatacaatactaccaaaagccaaagattgaacatgcaaccccactcaatacggttcatcctcttgtgtaaa |
40787181 |
T |
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| Q |
113 |
agattattactagaagaaattaaacatatgaatgaccaacaataatacccgaaagtgatgatatatcccaataagggagaatacttgagttataactgat |
212 |
Q |
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| T |
40787182 |
agattattactagaagaaattaaacatatgaatgaccaacaataatacccgaaagtgatgatatatcccaataagggagaatacttgagttataactgat |
40787281 |
T |
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| Q |
213 |
cgttgaattattgcctagactacctaggcacatggtcgttagtgatttagagtataccgagaatgcactatcgatataaattgatttcacaatcaaaatt |
312 |
Q |
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| T |
40787282 |
cgttgaattattgcctagactacctaggcacatggtcgttagtgatttagagtataccgagaatgcactatcgatataaattgatttcacaatcaaaatt |
40787381 |
T |
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| Q |
313 |
cacaacattgttttataaacgcattttgcaacctcagtgtaaagataaccataaaatatttgattgtaaactacgctatttgagtatggcggatgagttt |
412 |
Q |
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|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40787382 |
cataacattgttttataaactcattttgcaacctcagtgtaaagataaccataaaatatttgattgtaaactacgctatttgagtatggtggatgagttt |
40787481 |
T |
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| Q |
413 |
ggctaccacaacttaacgaatcaaaatttaaaccacatctaaaagatatattcacactaggattaatac |
481 |
Q |
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| T |
40787482 |
ggctaccacaacttaacgaatcaaaatttaaaccacatctaaaagatatattcacactaggattaatac |
40787550 |
T |
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