View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_low_12 (Length: 492)
Name: NF5907_low_12
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 7 - 475
Target Start/End: Original strand, 6229688 - 6230156
Alignment:
| Q |
7 |
tccaagaatatgagtagaagtccaataaaaaatcttcatgttgacaataagtcatcattgcataaaaagtcgcattctccgaaaaggaaggtaattgtca |
106 |
Q |
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| T |
6229688 |
tccaagcaaatgagtagaagtccaataaaaaatcttcatgttgacaataagtcatcattgcataaaaagtcgcattctccgaaaaggaaggtaattgtca |
6229787 |
T |
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| Q |
107 |
tctgtgttttagtactagtaggtgaaaagaaattccttgtagttaatgattgtgaattgtgatatttcccactgtgcagcaacaaccaagggtaaaagaa |
206 |
Q |
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| T |
6229788 |
tctgtgttttagtactagtaggtgaaaagaaattccttgtagttaatgattgtgaattgtgatatttcccactgtgcagcaacaaccaagggtaaaagaa |
6229887 |
T |
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| Q |
207 |
cagaaaattgcagaattaagacaacctagtccacgccaaatgtcaacagaagctgactgtccaaatgtgatttcggaaaatattctgaagtgcttatcaa |
306 |
Q |
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| T |
6229888 |
cagaaaattgcagaattaagacaacctagtccacaccaaatgtcaacagaagctgactgtccaaatgtgatttcggaaaatattctgaagtgcttatcaa |
6229987 |
T |
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| Q |
307 |
gcattctcttgagaatgagttcagtgaagtatccaggttctgcaggcgacatatcttcgcccttatgggctctaaagcctcaaaaccgtgttgaaggaac |
406 |
Q |
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| T |
6229988 |
gcattctcttgagaatgagttcagtgaagtatccaggttctgcaggcgacatatcttcgcccttatgggctctaaagcctcaaaaccgtgttgaaggaac |
6230087 |
T |
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| Q |
407 |
ggagttttgggacccgtatggcatctgtctggaatttggaaggagggatattggtccctacaagcattt |
475 |
Q |
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| T |
6230088 |
agagttttgggacccgtatggcatctgtctggaatttggaaggagggatattggtccctacaagcattt |
6230156 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 46640488 - 46640447
Alignment:
| Q |
285 |
aatattctgaagtgcttatcaagcattctcttgagaatgagt |
326 |
Q |
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| T |
46640488 |
aatattctgaagtgcttaactagcattctcttgagaatgagt |
46640447 |
T |
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