View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_low_13 (Length: 467)
Name: NF5907_low_13
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 15 - 452
Target Start/End: Original strand, 134890 - 135345
Alignment:
| Q |
15 |
aagaatatgttggaggacattttcgaggtctacatatacctaataattttcgtttaatttttgaggcctctttttgtaccaaaaataaaatcagagactt |
114 |
Q |
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| T |
134890 |
aagaatatgttggaggacattttcgaggtctacatatacctaataatttttatttaatttttgaggcctctttttgtaccaaaaataaaatcagagactt |
134989 |
T |
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| Q |
115 |
taagaacattta-------------------tttattgcattatgtgggactttaaacattaaaattgatgatactcttaactttagcagcttactacct |
195 |
Q |
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| T |
134990 |
taagaacatttactaatgtagaaaacctttatttattgcattatgtgggactttaaacattaaaattgatgatactcttaactttagcagcttactacgt |
135089 |
T |
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| Q |
196 |
ttggtgaaatgataaaacataaatgatgttggtgtaaaattatttgagggttctaagtcattgagaatcgctaacgcttttccagctaaaattgaaggtg |
295 |
Q |
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| T |
135090 |
ttggtgaaatgataaaacataaatgatgttggtgtaaaattatttgagggttctaagtcattgggaatcgctaacgcttttccagctaaaattgaaggtg |
135189 |
T |
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| Q |
296 |
ttatatgtgtcatataatttgtttctaggagaggttgaggaaatctttgacttgaatgtgactcctctttgactattcaagtttttagtaattcttcttt |
395 |
Q |
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| T |
135190 |
ttatatgtgtcatataatttgtttctaggagaggttgaggaaatctttgacttgaatgtgactcctctttgactattcaagtttttagtaattcttcttt |
135289 |
T |
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| Q |
396 |
ggttctttggtgattgcagaatcgttggtaaatttgtctcaatatcattcaagaatg |
452 |
Q |
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| T |
135290 |
ggttctttggtgattgcagaatcgttggtaaa-ttgtctcaatatcattcaagaatg |
135345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 131712 - 131811
Alignment:
| Q |
21 |
atgttggaggacattttcgaggtctacatatacctaataattttcgtttaatttttgaggcctctttttgtaccaaaaataaaatcagagactttaagaa |
120 |
Q |
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| T |
131712 |
atgttggaggacattttcgaggcctggatg--cctagtaattttcgtttaatttt-gaggcttctttttgtaccaaaaataaagtgggagacattaagaa |
131808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 131863 - 131958
Alignment:
| Q |
154 |
attaaaattgatgatactcttaactttagcagcttactacctttggtgaaatgataaaacataaatgatgttggtgtaaaattatttgagggttct |
249 |
Q |
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| T |
131863 |
attataattgaggatactcttagctttattaacttactacctttggagaaacgatgaaagataagtgatgttggtgtaaacttgtttaagggttct |
131958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 18850625 - 18850662
Alignment:
| Q |
167 |
atactcttaactttagcagcttactacctttggtgaaa |
204 |
Q |
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| T |
18850625 |
atactcttaactttagcagtttactacctttggagaaa |
18850662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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