View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_low_16 (Length: 450)
Name: NF5907_low_16
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 9 - 432
Target Start/End: Original strand, 294658 - 295081
Alignment:
| Q |
9 |
ttatactaaaattcaattttatttagacaacaagaaaggggttaatgatgcataccttttttagaataactttatccttagatttgggttccaaccttgt |
108 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
294658 |
ttatactaaaattcaattttatttagacaacaagtaaggggttaatgatgcataccttttttagaataactttatccttagatttgggttccaaccttgt |
294757 |
T |
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| Q |
109 |
tgccttggatcttcctctcttttcctcctcaacatccaccacattctttgagatcaaaacaccagaataaacaacaccaaatgacccttcaccgatttta |
208 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
294758 |
tgccttggatcttcctctcttgtcctcctcaacatccaccacattctttgagatcaaaacaccagaataaacaacaccaaatgacccttcaccgatttta |
294857 |
T |
|
| Q |
209 |
tctccaacaagaaaatcaccagtcttcaaatttctccttccagatagattgtcaaaaccaagttgaagaggagcaaaaaggtaagcatcaatggcaccaa |
308 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
294858 |
tctccaacaagaaaatcaccagtcttcaagtttctccttccagatagattgtcaaaaccaagttgaagaggagcaaaaaggtaagcatcaatggcaccaa |
294957 |
T |
|
| Q |
309 |
taagaacacctggtcttgcagttaagtatatccatatgagtccaccaaaaagaagaaactcccatctctgcatgtctgataattcttgaaactgaagtag |
408 |
Q |
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| T |
294958 |
taagaacacctggtcttgcagttaagtatatccatatgagtccaccaaaaagaagaaactcccatctctgcatgtctgataattcttgaaactgaagtag |
295057 |
T |
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| Q |
409 |
tcctgatcgaaggaaagaaggaat |
432 |
Q |
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| T |
295058 |
tcctgatcgaaggaaagaaggaat |
295081 |
T |
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Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 163 - 332
Target Start/End: Complemental strand, 27490881 - 27490712
Alignment:
| Q |
163 |
caaaacaccagaataaacaacaccaaatgacccttcaccgattttatctccaa-caagaaaatcaccagtcttcaaatttctccttccagatagattgtc |
261 |
Q |
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||||||| |||||||||||||||||||||||||||| || || ||| | |||| ||||||| |||| |||||||||||||||||||||||| | | || |
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| T |
27490881 |
caaaacagcagaataaacaacaccaaatgacccttctcctatcttaccaccaatcaagaaa-tcactcctcttcaaatttctccttccagataaactatc |
27490783 |
T |
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| Q |
262 |
aaaaccaagttgaagaggagcaaaaaggtaagcatcaatggcaccaataagaacacctggtcttgcagtta |
332 |
Q |
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||| ||| ||| | ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
27490782 |
caaaacaaattgcattggagccaaaaggtatgcatcaatagcaccaataagaacacctggtcttgcagtta |
27490712 |
T |
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