View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_low_18 (Length: 425)
Name: NF5907_low_18
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 34848452 - 34848852
Alignment:
| Q |
1 |
agattggaggggtatctctagaaactatgtgacgacaagaacaccaacacaagttgcaagccatgctcaaaagtattttattcgacttgcaaccttgaat |
100 |
Q |
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| T |
34848452 |
agattggaggggtatctctagaaactatgtgactacaagaacaccaacacaagttgcaagccatgctcaaaagtattttattcgacttgcaaccttgaat |
34848551 |
T |
|
| Q |
101 |
aagaagaagagacgttcaagtctctttgacatggtatatattatataatatttcatgatcaactaactagcactcctttcttaatttatgtatat-nnnn |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
34848552 |
aagaagaagagacgttcaagtctctttgacatggtatatattatataatatttcatgaccaactaactagcactcctttcttaatttatatatataaaaa |
34848651 |
T |
|
| Q |
200 |
nnnttcttcgttcttaatcatgaaatatgcatttcatatttcattgaatttaatgaaatgcatacttcatgtttattgaaattattaaaagtctcacatt |
299 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| |
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| T |
34848652 |
aaattcttcgttcttaatcatgaaatatgc-------atttcattgaatttaatgaaatgcatacttcatgttcattcatattattaaaagtctcacatt |
34848744 |
T |
|
| Q |
300 |
taataaaatcaggtttataaaagagtttgtaggtgggaaaattttgtacttctttacaagcccattttgtaaaagagnnnnnnnattcctctgatttctt |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
34848745 |
taataaaatcaggtttataaaagagtttgtaggtgggaaaaatttgtacttctttacaagcccattttataaaagagtttttttattcctctgatttctt |
34848844 |
T |
|
| Q |
400 |
aaaaagca |
407 |
Q |
| |
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|||||||| |
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| T |
34848845 |
aaaaagca |
34848852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 44300618 - 44300691
Alignment:
| Q |
2 |
gattggaggggtatctctagaaactatgtgacgacaagaacaccaacacaagttgcaagccatgctcaaaagta |
75 |
Q |
| |
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|||||||| || ||||| || |||||||||| ||||||||||| || || |||||||| |||||||||||||| |
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| T |
44300618 |
gattggagaggaatctcaaggaactatgtgaaaacaagaacacctacgcaggttgcaagtcatgctcaaaagta |
44300691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 4386753 - 4386803
Alignment:
| Q |
28 |
tgtgacgacaagaacaccaacacaagttgcaagccatgctcaaaagtattt |
78 |
Q |
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|||||| ||||| | || ||||||||||||||| ||||||||||||||||| |
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| T |
4386753 |
tgtgacaacaaggatacaaacacaagttgcaagtcatgctcaaaagtattt |
4386803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 29564910 - 29564950
Alignment:
| Q |
38 |
agaacaccaacacaagttgcaagccatgctcaaaagtattt |
78 |
Q |
| |
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| T |
29564910 |
agaacaccaactcaagtagcaagccatgctcaaaagtattt |
29564950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 42729416 - 42729375
Alignment:
| Q |
104 |
aagaagagacgttcaagtctctttgacatggtatatattata |
145 |
Q |
| |
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|||||| |||||||||||||||||||| ||||||||| |||| |
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| T |
42729416 |
aagaagcgacgttcaagtctctttgacttggtatatactata |
42729375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 12134774 - 12134822
Alignment:
| Q |
39 |
gaacaccaacacaagttgcaagccatgctcaaaagtattttattcgact |
87 |
Q |
| |
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|||||||||||||||| ||||||||||| ||||| || || |||||||| |
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| T |
12134774 |
gaacaccaacacaagtagcaagccatgcgcaaaaatacttcattcgact |
12134822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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