View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_low_19 (Length: 418)
Name: NF5907_low_19
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 96 - 400
Target Start/End: Complemental strand, 18217407 - 18217103
Alignment:
| Q |
96 |
tcacatttttcttcttggtgacaaaatccaaaggagcatcatcattattcccaaaatctttggctccattcaagctaagtctcccttttgaattcagatt |
195 |
Q |
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| T |
18217407 |
tcacatttttcttcttggtgacaaaatccaaaggggcatcatcattattcccaaaatctttggctccattcaagctaagtctcccttttgaattcagatt |
18217308 |
T |
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| Q |
196 |
agatggattaaaatcatgtggagcaatcattcccgccgttacagagggccccacttgccaaacatggttaatggcggtaacatcaaccggaaccttaacg |
295 |
Q |
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| T |
18217307 |
agatggattaaaatcatgtggagcaatcattcccgccgttacagagggccccacttgccaaacatggttaatggcggtaacattaaccggaaccttaacg |
18217208 |
T |
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| Q |
296 |
gtagcaaaaatcttcattaaaccaccagcttcctcggctttcatatcccaaacatcaaaagaaagcttcccaggaataaaaaccttgtaagatttaaggt |
395 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18217207 |
gtagcaaaaatcttcattaaaccaccatcttcctcggctttcatatcccaaacatcaaaagaaagcttcccaggaataaaaaccttgtaagatttaaggt |
18217108 |
T |
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| Q |
396 |
ccaat |
400 |
Q |
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||||| |
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| T |
18217107 |
ccaat |
18217103 |
T |
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