View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5907_low_21 (Length: 413)
Name: NF5907_low_21
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 6 - 325
Target Start/End: Original strand, 47088110 - 47088428
Alignment:
| Q |
6 |
cagagattaacctcacacttaaaggaagcattagttatgtgctaaaatcacattcactacacaactgctgagctatgttgtgtgtgtaggtgggtagaca |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47088110 |
cagagattaacctcacacttaaaggaagcattagttatgtgctaaaatcacattcactacacaactgctgagctatgttgtgtgtgtaggtgggtagaca |
47088209 |
T |
|
| Q |
106 |
cgtctgtgttagagagagagaatcctaaccagacaaactccaaagctccaatgacagaaaagtatcagaggctcggattcnnnnnnnnnnnntgtagcac |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
47088210 |
cgtctgtgttagagagagagaatcctaaccagacaaactccaaagctccaatgacagaaaagtaacagaggctcggattc-aaaaaaaaaaatgtagcac |
47088308 |
T |
|
| Q |
206 |
atttgttttcaaaacaataaaacaaacatgttatacgttattttctagtattccacattacgggcagctaactgtctaagacaaagaatgagtgtaaatt |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47088309 |
atttgttttcaaaacaataaaacaaacatgttataagttattttctagcattccacattacgggcagctaactgtctaagacaaagaatgagtgtaaatt |
47088408 |
T |
|
| Q |
306 |
attgcattagctggccagat |
325 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
47088409 |
attgcattagctggccagat |
47088428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 320 - 413
Target Start/End: Original strand, 47088458 - 47088551
Alignment:
| Q |
320 |
ccagatgttttgtttaacatcacaagcagaagctacttaagttcacgctataaaattacattaccaagatacaatagtatgtaatgacatgaaa |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47088458 |
ccagatgttttgtttaacatcacaagcagaagctacttaagttcacactataaaattacattaccaagatacaatagtatgtaatgacatgaaa |
47088551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University