View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_low_22 (Length: 409)
Name: NF5907_low_22
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 398
Target Start/End: Complemental strand, 5516817 - 5516437
Alignment:
| Q |
18 |
tcaacagtcttagttatcggttaataataacaaatttggtgcaattcggttaagaaaatcacttccgaacgaaaaaagtacatttcaattttttgtaaag |
117 |
Q |
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| T |
5516817 |
tcaacagtcttagttatcggttaataataacaaatttggtgcaattcggttaagaaaatcacttccgaacgaaaaaagtacatttcaattttttgtaaag |
5516718 |
T |
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| Q |
118 |
gtagttttggttcgtttccgagccatagaactggtgcaacatatacctaaacatttccattcggttcgaggcaaaccattaatggtccggttcagnnnnn |
217 |
Q |
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| T |
5516717 |
gtagttttggttcgtttccgagccatagaactggtgcaacatatacctaaacatttccattcggttcgaggcaaaccattaatggtccggttcagttttt |
5516618 |
T |
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| Q |
218 |
nngaactatagtaacagttcagtttggtttaattttcttcttgaaccgaaccataaacaatctaaaataccacaattgttaccacaggtcaggaatggaa |
317 |
Q |
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| T |
5516617 |
ttgaactatagtaacagttcagtttggtttagttttcttcttgaaccgaaccataaacaatctaaaataccacagttgttactacaggtcaggaatggaa |
5516518 |
T |
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| Q |
318 |
caaaaacgagtttgagggagataaaatcaaagctaaatttgctcaaaaggtatatatttattggcttcaggtctacttcat |
398 |
Q |
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| T |
5516517 |
caaaaacgagtttgagggagataaaatcaaagcgaaatttgctcaaaaggtatatatttattggcttcaggtctacttcat |
5516437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 271
Target Start/End: Complemental strand, 36928031 - 36927989
Alignment:
| Q |
229 |
taacagttcagtttggtttaattttcttcttgaaccgaaccat |
271 |
Q |
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| T |
36928031 |
taacagttcagtttggtttaattttcatctcaaaccgaaccat |
36927989 |
T |
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