View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_low_23 (Length: 402)
Name: NF5907_low_23
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 15 - 383
Target Start/End: Complemental strand, 7096238 - 7095870
Alignment:
| Q |
15 |
taggcaggtaaatctaggtggtggataatgtgaatcaagaatgttgagggtgagaggttttttaaagatttaaatttgagtggtagaaatccaagtttct |
114 |
Q |
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| T |
7096238 |
taggcaggtaaatctaggtggtggataatgtgaatcaagaatgttgagggtgagaggttttttaaagatttaaatttgagtggtagaaatctaagtttct |
7096139 |
T |
|
| Q |
115 |
gtgagttaagatagtggttctatgagtatttatgaagatatagtaatgacttgtttaagcattgcaggaaacaatgcctccaagacgtactccggagact |
214 |
Q |
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| T |
7096138 |
gtgagttaggatagtggttctatgagtatttatgaagatagagtaatgacttgtttaagcattgcaggaaacaatgcctccaagacgtactccggagact |
7096039 |
T |
|
| Q |
215 |
actggaacttctggagatgttaacgcccagatggctcaggctatgactgacatggctgctgctgttgctgcacaaacagccgccaaaattcagcgagacc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7096038 |
actggaacttctggagatgttaacgcccagatggctcaggctatgactgacatggctgctgctgttgctgcacaaacagccgccaaaattcagcgagacc |
7095939 |
T |
|
| Q |
315 |
tattgaaacagcagagagaagatagggaagcagattcaaggggattggcagatttccgtcgtcacaatc |
383 |
Q |
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| T |
7095938 |
aattgaaacagcagagagaagatagggaagcagattcaaggggattggcagatttccgtcgtcacaatc |
7095870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 60 - 383
Target Start/End: Original strand, 8375609 - 8375932
Alignment:
| Q |
60 |
gagggtgagaggttttttaaagatttaaatttgagtggtagaaatccaagtttctgtgagttaagatagtggttctatgagtatttatgaagatatagta |
159 |
Q |
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| T |
8375609 |
gagggtgagaggttttttaaagatttaaatttgagtgatagaaatctaagtttctgtgagttaagatagtggttctatgagtatttatgaagatatagta |
8375708 |
T |
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| Q |
160 |
atgacttgtttaagcattgcaggaaacaatgcctccaagacgtactccggagactactggaacttctggagatgttaacgcccagatggctcaggctatg |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8375709 |
atgacttgtttaagcattgcaggaaacaatgcctccaagacgtactccggagactattggaacttctggagatgttaacgcccagatggctcaggctatg |
8375808 |
T |
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| Q |
260 |
actgacatggctgctgctgttgctgcacaaacagccgccaaaattcagcgagacctattgaaacagcagagagaagatagggaagcagattcaaggggat |
359 |
Q |
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| T |
8375809 |
actgacatggctgctgctgctgctgcacaaacagccgccaaaattcagcgagaccaattgaaacagcagagagaagatagggaagcagattcaaggggat |
8375908 |
T |
|
| Q |
360 |
tggcagatttccgtcgtcacaatc |
383 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
8375909 |
tggcagatttccgtcgtcacaatc |
8375932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 212 - 383
Target Start/End: Original strand, 15420358 - 15420529
Alignment:
| Q |
212 |
actactggaacttctggagatgttaacgcccagatggctcaggctatgactgacatggctgctgctgttgctgcacaaacagccgccaaaattcagcgag |
311 |
Q |
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||||||||||| |||| |||||||| || |||||||| |||| |||| |||||||||||| || |||||||||||||| | ||||||||||||||| | |
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| T |
15420358 |
actactggaacccctggtgatgttaatgctcagatggccaaggcgatgagtgacatggctgcggcggttgctgcacaaactgtcgccaaaattcagcggg |
15420457 |
T |
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| Q |
312 |
acctattgaaacagcagagagaagatagggaagcagattcaaggggattggcagatttccgtcgtcacaatc |
383 |
Q |
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| | |||||||| |||||||||||||||| ||||||||||||||| ||||| ||||| ||||||||||||| |
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| T |
15420458 |
atcagttgaaacaacagagagaagatagggcagcagattcaaggggcttggctgattttcgtcgtcacaatc |
15420529 |
T |
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