View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_low_27 (Length: 350)
Name: NF5907_low_27
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 14223032 - 14223353
Alignment:
| Q |
19 |
atgtcgacaccaataatattttgagaatatttgtcgtgtatgtgtcatgtcggacgccgaaaacgtatttgatcagaagtgtctgtgctatagagatgat |
118 |
Q |
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| T |
14223032 |
atgtcgacaccaataatattttgagaatatgtgtcgtgtatgtgtcatgtcagacgccgaaaacgtatttgatcagaagtgtcggtgctatagagatgat |
14223131 |
T |
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| Q |
119 |
attattcattttgatgattgttggatgcctttcatttgactttctcctttatcaggacaatgtgtctttgtagtttgattcttgaggtttaggttttctt |
218 |
Q |
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| T |
14223132 |
attattcattttgatgattgttggatgcctttcatttgactttctcctttatcaggacaatgtgtctttgtagtttgattcttgaggtctaggttttctt |
14223231 |
T |
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| Q |
219 |
agatcacactttgattgcccaaaattgttgtcgatagcggaaggccaaaaatacgccatttaaacattccattgcggactatggcaccaccgccgtgggt |
318 |
Q |
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| T |
14223232 |
agatcacaatttgattgcccaaaattgttgtcgatagcagaaggccaaaaatacgccatttaaacattccattgcggactatggcaccaccgccgtggtt |
14223331 |
T |
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| Q |
319 |
tactcttcacaaattgcctatg |
340 |
Q |
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| T |
14223332 |
tactcttcacaaattgcctatg |
14223353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 121 - 293
Target Start/End: Original strand, 14227340 - 14227512
Alignment:
| Q |
121 |
tattcattttgatgattgttggatgcctttcatttgactttctcctttatcaggacaatgtgtctttgtagtttgattcttgaggtttaggttttcttag |
220 |
Q |
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| T |
14227340 |
tattcattttgatgattgctggatgcctttcacttgacttacttctttattaagacaatgtgtctttgtagtttgattcttgaggtttaggttttcttag |
14227439 |
T |
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| Q |
221 |
atcacactttgattgcccaaaattgttgtcgatagcggaaggccaaaaatacgccatttaaacattccattgc |
293 |
Q |
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| T |
14227440 |
atcacactttgattgccgataagtgtttttgatggctgaaggccaaaaatccgtcatataaacatgccattgc |
14227512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 89 - 253
Target Start/End: Original strand, 14229623 - 14229784
Alignment:
| Q |
89 |
gatcagaagtgtctgtgctatagagatgatattattcattttgatgattgttggatgcctttcatttgactttctcctttatcaggacaatgtgtctttg |
188 |
Q |
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| T |
14229623 |
gatcagaagtgtcagtgctatagagataatataa---attttgatggttgttgggtatctttcacttgactttctcctttattaggacaatgtgtctttg |
14229719 |
T |
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| Q |
189 |
tagtttgattcttgaggtttaggttttcttagatcacactttgattgcccaaaattgttgtcgat |
253 |
Q |
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| T |
14229720 |
tagtttgattctcgaggtttaggtttgttttgatcactctttgattccccgaaactgttctcgat |
14229784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 16151862 - 16151808
Alignment:
| Q |
19 |
atgtcgacaccaataatattttgagaatatttgtcgtgtatgtgtcatgtcggac |
73 |
Q |
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| T |
16151862 |
atgtcgacaccaataatattttgagaatatgtgtcgtgtatgtgtcatgtcggac |
16151808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 301
Target Start/End: Complemental strand, 17355831 - 17355786
Alignment:
| Q |
256 |
cggaaggccaaaaatacgccatttaaacattccattgcggactatg |
301 |
Q |
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| T |
17355831 |
cggaaggccaaaaattcgccatataaacatgccattgcggcctatg |
17355786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 41006903 - 41006851
Alignment:
| Q |
257 |
ggaaggccaaaaatacgccatttaaacattccattgcggactatggcaccacc |
309 |
Q |
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| T |
41006903 |
ggaaggccagaagtacgccatataaacatgccattgtggcctatggcaccacc |
41006851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 40158406 - 40158374
Alignment:
| Q |
81 |
acgtatttgatcagaagtgtctgtgctatagag |
113 |
Q |
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| T |
40158406 |
acgtatttgatcagaagtgtcggtgctatagag |
40158374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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