View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_low_3 (Length: 706)
Name: NF5907_low_3
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 262 - 687
Target Start/End: Original strand, 7663940 - 7664365
Alignment:
| Q |
262 |
caacatagatcagaaggattttgtactacaaataagaaaatgaatccctcaaaattttctcttctcaaaatcttctannnnnnncacttgttcttttttc |
361 |
Q |
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| T |
7663940 |
caacatagatcaggaggattttgtactacaaacaagaaaataaatccctcaaagttttctcttctcaaaatcttctattttttccacttgctcttttttc |
7664039 |
T |
|
| Q |
362 |
attcaaaagtcttccctccctttccttcaaactctcaaaacttaagagtttatgatggatcgaatgtattgttaaagatgagttacttcaataagcaatc |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7664040 |
attcaaaagtcttccctccctttccttcaaactctcaaaacttaagagtttatgatggatcgaatgtattgttaaagatgagttacttcaataagcaatc |
7664139 |
T |
|
| Q |
462 |
atccttataaaactttgttccgtcaatctactctaaccgtaaaactcgttaagaatacacttttttaatttaaaacttcttaaaaccatcattggaggtg |
561 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7664140 |
atccttataaaactttgttccgtcaatctactctaacagtaaaactcgttaagaatacacttttttaatttaaaacttcttaaaaccgtcattggaggtg |
7664239 |
T |
|
| Q |
562 |
cttttatctatccgtttattgggacaattttttaaaattaaactgaactctaaactcgagatagatttcattgttggcaagaacaaagatacctctcata |
661 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7664240 |
cttttatctatccgtttattgggacaattttttaaaattaaattgaactctaaactcgagatagatttcattgtcggcaagaacaaagatacctctcata |
7664339 |
T |
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| Q |
662 |
agcggcaagaacaaacaagtacaact |
687 |
Q |
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| T |
7664340 |
aacggcaagaacaaacaagtacaact |
7664365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 5 - 180
Target Start/End: Original strand, 7663689 - 7663864
Alignment:
| Q |
5 |
gcatgtccaagaatataactcattataaatgatttaattgagctctccactgccacatatctgaaacaatttgtttgtcttttacttggaggtccaacac |
104 |
Q |
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|||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7663689 |
gcatctccaatagtataactcattataaatgatttaattgagctatccactgccacatatctgaaacaatttgtttgtcttttacttggaggtccaacac |
7663788 |
T |
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| Q |
105 |
tttaagctctgtttgacaatttggaggatatgagagggctttcaggatgagaaacatagggaagaaaaaattaatc |
180 |
Q |
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| T |
7663789 |
tttaagctctgtttgacaatttggaggatatgagagggctttcaggatgagaaacatagggaagaaaaaattaatc |
7663864 |
T |
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