View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5907_low_31 (Length: 342)

Name: NF5907_low_31
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5907_low_31
NF5907_low_31
[»] chr3 (11 HSPs)
chr3 (5-325)||(28416083-28416403)
chr3 (5-178)||(4064567-4064740)
chr3 (5-178)||(37966904-37967077)
chr3 (5-178)||(22400134-22400306)
chr3 (5-178)||(47332233-47332409)
chr3 (8-178)||(33953728-33953898)
chr3 (191-325)||(37967103-37967237)
chr3 (191-325)||(4064407-4064541)
chr3 (191-325)||(33953568-33953702)
chr3 (191-325)||(22400332-22400466)
chr3 (195-325)||(47332073-47332202)
[»] chr2 (5 HSPs)
chr2 (25-325)||(40265557-40265872)
chr2 (5-170)||(4649264-4649429)
chr2 (191-224)||(4649197-4649230)
chr2 (191-224)||(30764979-30765012)
chr2 (143-175)||(30764918-30764950)
[»] chr7 (11 HSPs)
chr7 (5-178)||(6614758-6614931)
chr7 (5-178)||(34641626-34641799)
chr7 (5-178)||(42051462-42051635)
chr7 (5-178)||(46806927-46807100)
chr7 (9-178)||(21951986-21952155)
chr7 (191-325)||(6614957-6615091)
chr7 (191-325)||(46807127-46807261)
chr7 (191-325)||(34641458-34641592)
chr7 (191-325)||(21951825-21951959)
chr7 (191-325)||(42051668-42051802)
chr7 (191-325)||(34640397-34640528)
[»] chr6 (6 HSPs)
chr6 (5-178)||(22512427-22512600)
chr6 (5-178)||(19422727-19422900)
chr6 (5-178)||(18900967-18901131)
chr6 (191-325)||(22512629-22512763)
chr6 (191-325)||(19422927-19423061)
chr6 (191-325)||(18900801-18900935)
[»] chr5 (11 HSPs)
chr5 (6-178)||(1596532-1596704)
chr5 (5-175)||(39563042-39563212)
chr5 (5-178)||(5810361-5810534)
chr5 (5-178)||(16480333-16480506)
chr5 (191-325)||(39562879-39563013)
chr5 (191-325)||(5810200-5810334)
chr5 (191-325)||(16480538-16480672)
chr5 (191-325)||(1596373-1596506)
chr5 (195-325)||(40832602-40832732)
chr5 (84-178)||(40832478-40832572)
chr5 (6-56)||(40832430-40832480)
[»] scaffold0009 (2 HSPs)
scaffold0009 (5-178)||(196725-196898)
scaffold0009 (191-325)||(196557-196691)
[»] chr8 (8 HSPs)
chr8 (5-178)||(18383428-18383601)
chr8 (5-178)||(39619920-39620093)
chr8 (5-178)||(6418736-6418909)
chr8 (191-325)||(39619757-39619891)
chr8 (25-178)||(12499544-12499697)
chr8 (191-325)||(6418939-6419073)
chr8 (191-325)||(18383260-18383394)
chr8 (191-325)||(12499380-12499514)
[»] chr4 (11 HSPs)
chr4 (5-178)||(5946019-5946192)
chr4 (8-178)||(34804009-34804179)
chr4 (5-178)||(36318398-36318571)
chr4 (5-178)||(36332607-36332780)
chr4 (6-178)||(27022445-27022618)
chr4 (191-325)||(36318237-36318371)
chr4 (191-325)||(36332446-36332580)
chr4 (191-325)||(5946227-5946361)
chr4 (191-325)||(34804209-34804343)
chr4 (191-325)||(27022284-27022418)
chr4 (196-325)||(44470478-44470613)
[»] chr1 (19 HSPs)
chr1 (5-178)||(45539192-45539364)
chr1 (6-178)||(2025179-2025351)
chr1 (5-175)||(2842549-2842719)
chr1 (5-178)||(24777590-24777763)
chr1 (5-170)||(38982374-38982539)
chr1 (5-178)||(18412379-18412543)
chr1 (5-170)||(28643626-28643782)
chr1 (191-325)||(45539390-45539524)
chr1 (5-178)||(32521808-32521972)
chr1 (195-325)||(2025381-2025511)
chr1 (191-325)||(18412577-18412711)
chr1 (191-325)||(28643450-28643584)
chr1 (191-325)||(43640637-43640771)
chr1 (191-325)||(32521642-32521776)
chr1 (191-323)||(24777791-24777923)
chr1 (5-114)||(43641055-43641163)
chr1 (106-178)||(43640802-43640874)
chr1 (191-224)||(2842748-2842781)
chr1 (191-224)||(38982307-38982340)
[»] scaffold0088 (1 HSPs)
scaffold0088 (239-325)||(22726-22812)
[»] scaffold1289 (1 HSPs)
scaffold1289 (5-54)||(1746-1795)


Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 5 - 325
Target Start/End: Complemental strand, 28416403 - 28416083
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28416403 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctccaccccatccaaccataacctacgtatctccttaaatggcttagagt 28416304  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaacnnnnnnnngtatccactatcatcaa 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||    
T  28416303 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaaaaaaaaaaagtatccactatcatcaa 28416204  T
Q  205 gttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattatcctcactcttcaca 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||    
T  28416203 gttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaatattaccacacatatgcctaattgtccccactcttcaca 28416104  T
Q  305 tgaactcaaccaacctattct 325  Q
    |||||||||||||||||||||    
T  28416103 tgaactcaaccaacctattct 28416083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 4064740 - 4064567
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||  ||||    
T  4064740 caacaatatatcccctgcacctcattccaagaaaaattctatgacatcgtctccactccatccaaccataacctacgtatctccttaaatggctgcgagt 4064641  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4064640 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 4064567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 37966904 - 37967077
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||    
T  37966904 caacaatatatcccctgcacctcattccaagaaaaattctatgacatcgtctccactccatccaaccataacctacgtatctccttaaatggctgagagt 37967003  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37967004 tattttgatataactcaaaagttcttctaaacatatcacacaaaggaccactctacaaccacgaattattgcaa 37967077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 22400134 - 22400306
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    |||||||||||||||||||||||||||||| |||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  22400134 caacaatatatcccctgcacctcattccaaaaaaaat-ctatgacatcgtctccaccccatccaaccctaacctacgtatctccttaaatggcatagagt 22400232  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22400233 tattttgatataaatcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 22400306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 47332409 - 47332233
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctcct---taaatggcttag 101  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||   ||||||||  |     
T  47332409 caacaatatatcccttgcacctcattccaagaaaaattctatgacatcgtctccaccccatccaaccctaacctacgtatctcctaattaaatggcacaa 47332310  T
Q  102 agttattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47332309 agttattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaatcattgcaa 47332233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 33953898 - 33953728
Alignment:
Q  8 caatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagttat 107  Q
    ||||||||||| |||||||||||||||||||  || |||| |||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  33953898 caatatatcccatgcacctcattccaagaaattttttatgacatcgtctccaccccatccaaccctaacctacgtatctccttaaatggcatagagttat 33953799  T
Q  108 tttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||    
T  33953798 tttgatataactcaaaagttcttctaaatatgtcacacaaaggaccactatacaaccacgaatcattgcaa 33953728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 191 - 325
Target Start/End: Original strand, 37967103 - 37967237
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37967103 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattgt 37967202  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    || |||| |||||||||||||||||||||||||||    
T  37967203 ccccactattcacatgaactcaaccaacctattct 37967237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 191 - 325
Target Start/End: Complemental strand, 4064541 - 4064407
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  4064541 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatgaaagtaattttaccacacatatgcctaattgt 4064442  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    || |||| |||||||||||||||||||||||||||    
T  4064441 ccccactattcacatgaactcaaccaacctattct 4064407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 191 - 325
Target Start/End: Complemental strand, 33953702 - 33953568
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  33953702 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccacccctattttaacaccatggaagtaattttaccacacatatgcctaattgt 33953603  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    || ||||||||||||||||||| ||||||||||||    
T  33953602 ccccactcttcacatgaactcacccaacctattct 33953568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 191 - 325
Target Start/End: Original strand, 22400332 - 22400466
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  22400332 tccactatcatcaagttgtcatcaaaccaatttttaatcctcatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattgt 22400431  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    || ||||||||||||||||||| ||||||||||||    
T  22400432 ccccactcttcacatgaactcacccaacctattct 22400466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 195 - 325
Target Start/End: Complemental strand, 47332202 - 47332073
Alignment:
Q  195 ctatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattatcctc 294  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| |    
T  47332202 ctatcatcaagttgtcatcaaaccaatttctaatcccca-ctccgcccctattttaacaccatggaagtaattttaccacacatacgcttaattgtcccc 47332104  T
Q  295 actcttcacatgaactcaaccaacctattct 325  Q
    |||||||||||||||||| ||||||||||||    
T  47332103 actcttcacatgaactcacccaacctattct 47332073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 25 - 325
Target Start/End: Original strand, 40265557 - 40265872
Alignment:
Q  25 ctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagttattttgatataactcaaaa 124  Q
    |||||| ||| |||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40265557 ctcatttcaaaaaaaattctatgacatcgtctccaccccatccaaccctaacctacgtatctccttaaatggcatagagttattttgatataactcaaaa 40265656  T
Q  125 gttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaacnnnnnnnngtat---------------ccactatcatcaagttgt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||         ||||               ||||||||||||||||||    
T  40265657 gttcttctaaatatatcacacaaaggaccactctacaaccacgaatcattgcaaaaaaaaggagtatttttctcattactctccactatcatcaagttgt 40265756  T
Q  210 catcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattatcctcactcttcacatgaac 309  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||| ||| ||||||||| ||||||    
T  40265757 catcaaaccaatttctaatccccatcttcgcccctattttaacatcatggaagtaattttaccacacatacgcctaattgtccccactcttcatatgaac 40265856  T
Q  310 tcaaccaacctattct 325  Q
    ||| || |||||||||    
T  40265857 tcatcctacctattct 40265872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 4649429 - 4649264
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||| || |||    
T  4649429 caacaatatatcccctgcacctcattccaagaaaaattctatgacatcgtctccaccccatccaaccctaaccaacgtatctccttaaatggcataaagt 4649330  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaat 170  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  4649329 tattttgatataactcaaaagttcctctagatatatcacacaaaggaccactctacaaccacgaat 4649264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 4649230 - 4649197
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttc 224  Q
    |||||||||||||||||||||||||| |||||||    
T  4649230 tccactatcatcaagttgtcatcaaatcaatttc 4649197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 30764979 - 30765012
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttc 224  Q
    |||||||||||||||||||||||||| |||||||    
T  30764979 tccactatcatcaagttgtcatcaaatcaatttc 30765012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 30764918 - 30764950
Alignment:
Q  143 cacaaaggaccactctacaaccacgaattattg 175  Q
    |||||||||||||||||||||||||||| ||||    
T  30764918 cacaaaggaccactctacaaccacgaatcattg 30764950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 158; Significance: 5e-84; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 6614758 - 6614931
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||    
T  6614758 caacaatatatcccctgcacctcattccaagaaaaattctatgacatcgtctccactccatccaaccataacctacgtatctccttaaatggctgagagt 6614857  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6614858 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 6614931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 34641799 - 34641626
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  34641799 caacaatatatcccctgcacctcattccaagaaaaattctatgacatcgtctccaccccatccaaccctaacctacgtatctccttaaatggcatagagt 34641700  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34641699 tattctcatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaatcattgcaa 34641626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 42051462 - 42051635
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  42051462 caacaatatatcccctgcacctcattccaagaaaaattctatgacatcgtctccaccccatccaaccctaacctacgtatctccttaaatggcatagagt 42051561  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42051562 tattctcatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaatcattgcaa 42051635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 46806927 - 46807100
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    ||||||||||||||||||||||||||||||||||||||| ||| || ||||| |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  46806927 caacaatatatcccctgcacctcattccaagaaaaattccatgacaccgtctccaccccatccaaccctaacctacgtatctccttaaatggcatagagt 46807026  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  46807027 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaatcattgcaa 46807100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 21952155 - 21951986
Alignment:
Q  9 aatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagttatt 108  Q
    ||||||||| ||||||||||||| ||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  21952155 aatatatcctctgcacctcattctaagaaaagttctatgacatcgtctccaccccatccaaccctaacctacgtatctccttaaatggcatagagttatt 21952056  T
Q  109 ttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21952055 tttatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaatcattgcaa 21951986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 191 - 325
Target Start/End: Original strand, 6614957 - 6615091
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6614957 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattgt 6615056  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    || ||||||||||||||||||||||||||||||||    
T  6615057 ccccactcttcacatgaactcaaccaacctattct 6615091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 191 - 325
Target Start/End: Original strand, 46807127 - 46807261
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||| |    
T  46807127 tccactatcatcaagttgtcatcaaaccaatttctaatccccatcttcgcctctattttaacaccatggaagtaattttaccacacatacgcctaattgt 46807226  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    |||||||||||||||||||||| ||||||||||||    
T  46807227 cctcactcttcacatgaactcacccaacctattct 46807261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 191 - 325
Target Start/End: Complemental strand, 34641592 - 34641458
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||||||| |    
T  34641592 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacatcatggaagtaattttaccacacacactcctaattgt 34641493  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    || ||||||||||||||||||| ||||||||||||    
T  34641492 ccccactcttcacatgaactcacccaacctattct 34641458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 191 - 325
Target Start/End: Complemental strand, 21951959 - 21951825
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    |||||||||||||||||||||| ||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  21951959 tccactatcatcaagttgtcattaaatcaatttctaatccccacctccacccctattttaacaccatggaagtaattttaccacacatacgcctaattgt 21951860  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    || ||||||||||||||||||| ||||||||||||    
T  21951859 ccccactcttcacatgaactcacccaacctattct 21951825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 191 - 325
Target Start/End: Original strand, 42051668 - 42051802
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |   |||||| |    
T  42051668 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacatcatggaagtaattttaccacacacacttctaattgt 42051767  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    || ||||||||||||||||||| ||||||||||||    
T  42051768 ccccactcttcacatgaactcacccaacctattct 42051802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 191 - 325
Target Start/End: Complemental strand, 34640528 - 34640397
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||| |  ||||||| |    
T  34640528 tccactatcatcaagt-gtcatcaaaccaatttctaatccccatctccgccc-tattt-aacatcatggaagtaattttaccacacacactcctaattgt 34640432  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    || ||||||||||||||||||| ||||||||||||    
T  34640431 ccccactcttcacatgaactcacccaacctattct 34640397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 150; Significance: 3e-79; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 22512427 - 22512600
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  22512427 caacaatatatcccctgcacctcattccaagaaaaattctatgacaccgtctccaccccatccaaccctaacctacgtatctccttaaatggcatagagt 22512526  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22512527 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaatcattgcaa 22512600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 19422727 - 19422900
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    |||||||||||||||||||||||||| |||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||| | ||||    
T  19422727 caacaatatatcccctgcacctcatttcaagaaaaattctatgacaccgtctccaccccatccaaccctaacctacgtatctccttaaatggcatggagt 19422826  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19422827 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaatcattgcaa 19422900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 18901131 - 18900967
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||         |||||| ||||||||||||||||||||||||| ||||||    
T  18901131 caacaatatatcccctgcatctcattccaagaaaaattctatgacatcgtct---------ccaaccctaacctacgtatctccttaaatggcatagagt 18901041  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18901040 tattctgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaatcattgcaa 18900967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 191 - 325
Target Start/End: Original strand, 22512629 - 22512763
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |    
T  22512629 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcctctattttaacaccatggaagtaattttaccacacatacgcctaattgt 22512728  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    || ||||||||||||||||||| ||||||||||||    
T  22512729 ccccactcttcacatgaactcatccaacctattct 22512763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 191 - 325
Target Start/End: Original strand, 19422927 - 19423061
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |    
T  19422927 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaggtaattttaccacacatacgcctaattgt 19423026  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    ||  |||||||||||||||||| ||||||||||||    
T  19423027 ccaaactcttcacatgaactcacccaacctattct 19423061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 191 - 325
Target Start/End: Complemental strand, 18900935 - 18900801
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||||||| |    
T  18900935 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacatcatggaagtaattttaccacacacactcctaattgt 18900836  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    || ||||||||||||||||||| ||||||||||||    
T  18900835 ccccactcttcacatgaactcacccaacctattct 18900801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 6 - 178
Target Start/End: Complemental strand, 1596704 - 1596532
Alignment:
Q  6 aacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagtt 105  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||    
T  1596704 aacaatatatcccctgcacctcattccaagaaaaattctatgacatcgtctccaccccatccaaccctaacctacgtatctccttaaatggcatagagtt 1596605  T
Q  106 attttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  1596604 attttgatataactcaaaagttcttctaaatatatcacacaaaggaccactatacaaccacgaatcattgcaa 1596532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 5 - 175
Target Start/End: Complemental strand, 39563212 - 39563042
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| ||||||||||||||||||||||||| || |||    
T  39563212 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctccaccgcattcaaccctaacctacgtatctccttaaatggcatatagt 39563113  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattg 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39563112 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaatcattg 39563042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 5810534 - 5810361
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    ||||||||||||||||||||||||||||||||||||||| ||| || ||||| |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  5810534 caacaatatatcccctgcacctcattccaagaaaaattccatgacaccgtctccaccccatccaaccctaacctacgtatctccttaaatggcatagagt 5810435  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  5810434 tattttgatataactcaaaagttcttctaaatatatcacacaaagtaccactctacaaccacgaatcattgcaa 5810361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 16480333 - 16480506
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  16480333 caacaatatatcccctgcacctcattccaagaaaaactctatgacatcgtctccaccccatccaaccctaacctacgtatctccttaaatggcatagagt 16480432  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16480433 tattctcatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaatcattgcaa 16480506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 191 - 325
Target Start/End: Complemental strand, 39563013 - 39562879
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  39563013 tccactatcatcaagttgtcatcaaaccaatttctaatacccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattgt 39562914  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    || ||||||||||||||||||| ||||||||||||    
T  39562913 ccccactcttcacatgaactcacccaacctattct 39562879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 191 - 325
Target Start/End: Complemental strand, 5810334 - 5810200
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |    
T  5810334 tccactatcatcaagttgtcgtcaaaccaatttctaatccccatctccgcctctattttaacaccatggaagtaattttaccacacatacgcctaattgt 5810235  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    |||||||||||||||||||||| ||||||||||||    
T  5810234 cctcactcttcacatgaactcacccaacctattct 5810200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 191 - 325
Target Start/End: Original strand, 16480538 - 16480672
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||||||| |    
T  16480538 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacatcatggaagtaattttaccacacacactcctaattgt 16480637  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    || ||||||||||||||||||| ||||||||||||    
T  16480638 ccccactcttcacatgaactcacccaacctattct 16480672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 191 - 325
Target Start/End: Complemental strand, 1596506 - 1596373
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1596506 tccactatcatcaagttttcatcaaaccaatttctaatccccatctctgcccctattttaacaccatggaagtaattttaccacacatatgcctaattgt 1596407  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    || |||||| |||||||||||  ||||||||||||    
T  1596406 ccccactctccacatgaactc-cccaacctattct 1596373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 195 - 325
Target Start/End: Original strand, 40832602 - 40832732
Alignment:
Q  195 ctatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattatcctc 294  Q
    ||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  40832602 ctatcatcaagttttcatcaaatcaatttctaatccccatctctgcccctattttaacaccatggaagtaattttaccacacatatgcctaattgtcccc 40832701  T
Q  295 actcttcacatgaactcaaccaacctattct 325  Q
    |||||||||||||||||  ||||||||||||    
T  40832702 actcttcacatgaactcgcccaacctattct 40832732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 40832478 - 40832572
Alignment:
Q  84 tctccttaaatggcttagagttattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40832478 tctccttaaatggcatagagttattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaatcattgcaa 40832572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 40832430 - 40832480
Alignment:
Q  6 aacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtct 56  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  40832430 aacaatatatcccctgcacctcattccaagaaaaattctatgacattgtct 40832480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 196898 - 196725
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  196898 caacaatatatcccctgcacctcattccaagaaaaattctatgacatcgtctccaccccatccaaccctaacctacgtatctccttaaatggcatagagt 196799  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  196798 tattctcatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaatcattgcaa 196725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 191 - 325
Target Start/End: Complemental strand, 196691 - 196557
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||||||| |    
T  196691 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacatcatggaagtaattttaccacacacactcctaattgt 196592  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    || ||||||||||||||||||| ||||||||||||    
T  196591 ccccactcttcacatgaactcacccaacctattct 196557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 146; Significance: 7e-77; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 18383601 - 18383428
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  18383601 caacaatatatcccctgcacctcattccaagaaaaattctatgacatcgtctccaccccatccaaccctaacctacgtatctccttaaatggcatagagt 18383502  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18383501 tattctcatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaatcattgcaa 18383428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 39620093 - 39619920
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    ||||||||||||||||||||||||||||||||||||||| ||| || ||||| |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  39620093 caacaatatatcccctgcacctcattccaagaaaaattccatgacaccgtctccaccccatccaaccctaacctacgtatctccttaaatggcatagagt 39619994  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39619993 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaatcattgcaa 39619920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 6418736 - 6418909
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||| ||||||    
T  6418736 caacaatatatcccctgcacctcattccaagaaaaattctatgacatcgtctccaccccatccaaccctaacctacgtatctcctcaaatggcatagagt 6418835  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6418836 tattctcatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaatcattgcaa 6418909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 191 - 325
Target Start/End: Complemental strand, 39619891 - 39619757
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |    
T  39619891 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcctctattttaacaccatggaagtaattttaccacacatacgcctaattgt 39619792  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    |||||||||||||||||||||| ||||||||||||    
T  39619791 cctcactcttcacatgaactcacccaacctattct 39619757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 25 - 178
Target Start/End: Complemental strand, 12499697 - 12499544
Alignment:
Q  25 ctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagttattttgatataactcaaaa 124  Q
    |||||| |||| ||||||||||| |||||||| ||||||||||||||  |||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  12499697 ctcatttcaagcaaaattctatgacatcgtctccaccccatccaacccaaacctacgtatctccttaaatgacatagagttattttgatataactcaaaa 12499598  T
Q  125 gttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||| |||||||    
T  12499597 gttcttctaaatatatcacacaatggaccacactacaaccacgaatcattgcaa 12499544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 191 - 325
Target Start/End: Original strand, 6418939 - 6419073
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||||||| |    
T  6418939 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacatcatggaagtaattttaccacacacactcctaattgt 6419038  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    || ||||||||||||||||||| ||||||||||||    
T  6419039 ccccactcttcacatgaactcacccaacctattct 6419073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 191 - 325
Target Start/End: Complemental strand, 18383394 - 18383260
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||||||| |    
T  18383394 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacatcatggaagtaattttaccacacacactcctaattgt 18383295  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    || ||||||||||||||||||| ||||||||||||    
T  18383294 ccccactcttcacatgaactcacccaacctattct 18383260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 191 - 325
Target Start/End: Complemental strand, 12499514 - 12499380
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||| |    
T  12499514 tccactatcatcaagttgtcatcaaaccaatttctaatccccatcttcgcccctattttaacatcatggaagtaattttaccacacatacgcctaattgt 12499415  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    || ||||||||| ||||||||| || |||||||||    
T  12499414 ccccactcttcatatgaactcatcctacctattct 12499380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 7e-77; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 5946019 - 5946192
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  5946019 caacaatatatcccctgcacctcattccaagaaaaattctatgacatcgtctccaccccatccaaccctaacctacgtatctccttaaatggcatagagt 5946118  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5946119 tattctcatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaatcattgcaa 5946192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 8 - 178
Target Start/End: Original strand, 34804009 - 34804179
Alignment:
Q  8 caatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagttat 107  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  34804009 caatatatcccctgcacctcattccaagaaaaattttatgacatcgtctccaccccatccaaccctaacctacgtatctccttaaatggcatagagttat 34804108  T
Q  108 tttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  34804109 tttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaatcacgaatcattgcaa 34804179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 36318571 - 36318398
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||| ||| |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  36318571 caacaatatatcccctgcaccttattccaagaaaaattctatgacatcatctccaccccatccaaccctaacctacgtatctccttaaatggcatagagt 36318472  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36318471 tattttgatataaatcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaatcattgcaa 36318398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 36332780 - 36332607
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||| ||| |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  36332780 caacaatatatcccctgcaccttattccaagaaaaattctatgacatcatctccaccccatccaaccctaacctacgtatctccttaaatggcatagagt 36332681  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36332680 tattttgatataaatcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaatcattgcaa 36332607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 6 - 178
Target Start/End: Complemental strand, 27022618 - 27022445
Alignment:
Q  6 aacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcacccc-atccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    ||||||||||||||||||||||||||||  |||||||||| | |||||||| |||||| |||||||| ||||||||||||||||||||||||| ||||||    
T  27022618 aacaatatatcccctgcacctcattccagtaaaaattctacgacatcgtctccacccccatccaaccctaacctacgtatctccttaaatggcatagagt 27022519  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27022518 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaatcattgcaa 27022445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 191 - 325
Target Start/End: Complemental strand, 36318371 - 36318237
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  36318371 tccactatcatcaagttgtcatcaaaccaatttataatccccatctccgcccctattttaacacaatggaagtaattttaccacacatatgcctaattgt 36318272  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    || ||||||||||||||||||| ||||| ||||||    
T  36318271 ccccactcttcacatgaactcacccaacatattct 36318237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 191 - 325
Target Start/End: Complemental strand, 36332580 - 36332446
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  36332580 tccactatcatcaagttgtcatcaaaccaatttataatccccatctccgcccctattttaacacaatggaagtaattttaccacacatatgcctaattgt 36332481  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    || ||||||||||||||||||| ||||| ||||||    
T  36332480 ccccactcttcacatgaactcacccaacatattct 36332446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 191 - 325
Target Start/End: Original strand, 5946227 - 5946361
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||||||| |    
T  5946227 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacatcatggaagtaattttaccacacacactcctaattgt 5946326  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    || ||||||||||||||||||| ||||||||||||    
T  5946327 ccccactcttcacatgaactcacccaacctattct 5946361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 191 - 325
Target Start/End: Original strand, 34804209 - 34804343
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||||||| |    
T  34804209 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacatcatggaagtaattttaccacacacactcctaattgt 34804308  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    || ||||||||||||||||||| ||||||||||||    
T  34804309 ccccactcttcacatgaactcacccaacctattct 34804343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 191 - 325
Target Start/End: Complemental strand, 27022418 - 27022284
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||   ||||||| |    
T  27022418 tccactatcatcaagttgtcatcaaaccaatttctaatatccatctccgcccctattttaacaccatggaagtaattttaccacgcattctcctaattgt 27022319  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    || ||||||||||||||||||| ||||||||||||    
T  27022318 ccccactcttcacatgaactcacccaacctattct 27022284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 196 - 325
Target Start/End: Original strand, 44470478 - 44470613
Alignment:
Q  196 tatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgc------ctaatta 289  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||      ||||||     
T  44470478 tatcattaagttgtcatcaaaccaatttcgaatccccatctccgcccctattttaacgccatggaagtaatattaccacacatacgcctaaatctaattg 44470577  T
Q  290 tcctcactcttcacatgaactcaaccaacctattct 325  Q
    |||  |||||||||||||||||| ||||||||||||    
T  44470578 tcccaactcttcacatgaactcacccaacctattct 44470613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 146; Significance: 7e-77; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 45539192 - 45539364
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  45539192 caacaatatatcccctgcacctcattccaa-aaaaattctatgacatcgtctccaccccatccaaccctaacctacgtatctccttaaatggcatagagt 45539290  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45539291 tattttgatataaatcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 45539364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 6 - 178
Target Start/End: Original strand, 2025179 - 2025351
Alignment:
Q  6 aacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagtt 105  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||  ||||||||||||||||||||||||| |||||||    
T  2025179 aacaatatatcccctgcacctcattccaagaaaaattctatgacatcgtctccaccccatccaacgctaacctacgtatctccttaaatggcatagagtt 2025278  T
Q  106 attttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2025279 attttcatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaatcattgcaa 2025351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 5 - 175
Target Start/End: Original strand, 2842549 - 2842719
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||| || |||    
T  2842549 caacaatatatcccctgcacctcattccaagaaaaattctatgacatcgtctccaccccatccaaccctaaccaacgtatctccttaaatggcataaagt 2842648  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattg 175  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||    
T  2842649 tattttgatataactcaaaagttcctctagatatatcacacaaaggaccactctacaaccacgaatcattg 2842719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 24777590 - 24777763
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| |||| || ||||||||||||||||| ||||||    
T  24777590 caacaatatatcccctacacctcattccaagaaaaattctatgacatcgtctccaccccatccaaccttaacatatgtatctccttaaatggcatagagt 24777689  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  24777690 tattttgaaataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccatgaatcattgcaa 24777763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 38982539 - 38982374
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||| || |||    
T  38982539 caacaatatatcccctgcacctcattccaagaaaaattctatgacatcgtctccaccccatccaaccctaaccaacgtatctccttaaatggcataaagt 38982440  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaat 170  Q
    |||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||    
T  38982439 tattttgatataactcaaaagttcctctagatatataacacaaaggaccactctacaaccacgaat 38982374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 18412379 - 18412543
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||         |||||| ||||||||||||||||||||||||| ||||||    
T  18412379 caacaatatatcccctgcacctcattccaagaaaaattgtatgacatcgtct---------ccaaccctaacctacgtatctccttaaatggcatagagt 18412469  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18412470 tattctgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaatcattgcaa 18412543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 28643782 - 28643626
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||         |||||| ||||||||||||||||||||||||| ||||||    
T  28643782 caacaatatatcccctgcacctcattccaagaaaaattctatgacatcgtct---------ccaaccctaacctacgtatctccttaaatggcatagagt 28643692  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaat 170  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28643691 tattctgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaat 28643626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 191 - 325
Target Start/End: Original strand, 45539390 - 45539524
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  45539390 tccactatcatcaagttgtcatcaaaccaatttttaatcctcatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattgt 45539489  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    || ||||||||||||||||||| ||||||||||||    
T  45539490 ccccactcttcacatgaactcacccaacctattct 45539524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 32521972 - 32521808
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||         |||||| ||||||||||||||||||||||||| ||||||    
T  32521972 caacaatatatcccctgcacctcattccaagaaaaattatatgacatcgtct---------ccaaccctaacctacgtatctccttaaatggcatagagt 32521882  T
Q  105 tattttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  32521881 tattctgatataactcaaaagttcttctaaatatatcacacaaaggaccactttacaaccacgaatcattgcaa 32521808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 195 - 325
Target Start/End: Original strand, 2025381 - 2025511
Alignment:
Q  195 ctatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattatcctc 294  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  2025381 ctatcatcaagttttcatcaaaccaatttctaatccccatctctgcccctattttaacaccatggaagtaattttaccacacatatgcctaattgtcccc 2025480  T
Q  295 actcttcacatgaactcaaccaacctattct 325  Q
    |||||||||||||||||  ||||||||||||    
T  2025481 actcttcacatgaactcgcccaacctattct 2025511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 191 - 325
Target Start/End: Original strand, 18412577 - 18412711
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||||||| |    
T  18412577 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacatcatggaagtaattttaccacacacactcctaattgt 18412676  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    || ||||||||||||||||||| ||||||||||||    
T  18412677 ccccactcttcacatgaactcacccaacctattct 18412711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 191 - 325
Target Start/End: Complemental strand, 28643584 - 28643450
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||||||| |    
T  28643584 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacatcatggaagtaattttaccacacacactcctaattgt 28643485  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    || ||||||||||||||||||| ||||||||||||    
T  28643484 ccccactcttcacatgaactcacccaacctattct 28643450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 191 - 325
Target Start/End: Complemental strand, 43640771 - 43640637
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  43640771 tccactatcatcaagttgtcatcaaaccaatttctaatcaccatctccgcccctattttaacaccatggaagtaattttaccacacatacgcctaattgt 43640672  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    ||   ||||||||||||||||| ||||||||||||    
T  43640671 cccatctcttcacatgaactcacccaacctattct 43640637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 191 - 325
Target Start/End: Complemental strand, 32521776 - 32521642
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||||||| |    
T  32521776 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacatcatggaagtaattttaccacacacactcctaattgt 32521677  T
Q  291 cctcactcttcacatgaactcaaccaacctattct 325  Q
    || ||||||||| ||||||||| ||||||||||||    
T  32521676 ccccactcttcatatgaactcacccaacctattct 32521642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 191 - 323
Target Start/End: Original strand, 24777791 - 24777923
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttctaatccccatctccgcccctattttaacaccatggaagtaattttaccacacatatgcctaattat 290  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |    
T  24777791 tccactatcatcaagttgttatcaaaccaatttctaatcaccatctccgcctctattttaacaccatggaagtaattttaccacacatacgcctaattgt 24777890  T
Q  291 cctcactcttcacatgaactcaaccaacctatt 323  Q
    || | ||||||||||||||||| ||||||||||    
T  24777891 cccctctcttcacatgaactcacccaacctatt 24777923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 43641163 - 43641055
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgtctgcaccccatccaaccataacctacgtatctccttaaatggcttagagt 104  Q
    |||||||||||||||| |||||||||| ||||||||||||||| ||||||||  ||||||||||||| ||||||||||||||||||||||| | ||||||    
T  43641163 caacaatatatcccctacacctcattc-aagaaaaattctatgacatcgtctctaccccatccaaccctaacctacgtatctccttaaatgacatagagt 43641065  T
Q  105 tattttgata 114  Q
    ||||||||||    
T  43641064 tattttgata 43641055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 43640874 - 43640802
Alignment:
Q  106 attttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaattattgcaa 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43640874 attttgatataactcaaaagttcttctaaatatatcacacaaaggaccactctacaaccacgaatcattgcaa 43640802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 2842748 - 2842781
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttc 224  Q
    |||||||||||||||||||||||||| |||||||    
T  2842748 tccactatcatcaagttgtcatcaaatcaatttc 2842781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 38982340 - 38982307
Alignment:
Q  191 tccactatcatcaagttgtcatcaaaccaatttc 224  Q
    |||||||||||||||||||||||||| |||||||    
T  38982340 tccactatcatcaagttgtcatcaaatcaatttc 38982307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 239 - 325
Target Start/End: Original strand, 22726 - 22812
Alignment:
Q  239 gcccctattttaacaccatggaagtaattttaccacacatatgcctaattatcctcactcttcacatgaactcaaccaacctattct 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||| ||||||||||||    
T  22726 gcccctattttaacaccatggaagtaattttaccacacatatgcctaattgtcccccctcttcacatgaactcacccaacctattct 22812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1289 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1289
Description:

Target: scaffold1289; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 1795 - 1746
Alignment:
Q  5 caacaatatatcccctgcacctcattccaagaaaaattctatggcatcgt 54  Q
    |||||||||||||||| |||||||||||||||||| ||||||| ||||||    
T  1795 caacaatatatcccctacacctcattccaagaaaatttctatgacatcgt 1746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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