View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_low_33 (Length: 336)
Name: NF5907_low_33
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 18139086 - 18138787
Alignment:
| Q |
19 |
cacagagtctattgtaactcacattcaaccactccaaattcttcacaccttcaggaagtttcccataaacccgattttgactcacatccaaatgtttcaa |
118 |
Q |
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| T |
18139086 |
cacagagtctattgtaactcacattcaaccactccaaattcttcacaccatcaggaagtttcccataaatccgattttgactcacatccaaatgtttcaa |
18138987 |
T |
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| Q |
119 |
ggactcgggaaactctagttttcccatatcaaacgccaacatgttccaagaaaggtctattgtctctgtctttttcgcaaaaccaaaaaacacggaggca |
218 |
Q |
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| T |
18138986 |
ggactcgggaaactctagttttcccatatcaaacgccaacatgttccaagaaaggtctattgtctctgtctttttcgcaaaaccaaaaaacacggaggca |
18138887 |
T |
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| Q |
219 |
tcaccttcaaatctgttatgtgacaagtggacaaccaaggagttcaaccttgccattgaaggagggattgaaccttttaagttattgttttgaaggagta |
318 |
Q |
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| T |
18138886 |
tcaccttcaaatctgttatgagacaagtcgacaaccaaggagttcaaccttgccatggaaggagggattgaacctgttaacttgttgttttgaaggagta |
18138787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 21 - 273
Target Start/End: Complemental strand, 18142020 - 18141768
Alignment:
| Q |
21 |
cagagtctattgtaactcacattcaaccactccaaattcttcacaccttcaggaagtttcccataaacccgattttgactcacatccaaatgtttcaagg |
120 |
Q |
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| T |
18142020 |
cagagtcgattgtaactcacattcaaccactgcaaattcttcgcaccatcgggaagttttccatatacccgattgtgactcacatccaaaagttttaagg |
18141921 |
T |
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| Q |
121 |
actcgggaaactctagttttcccatatcaaacgccaacatgttccaagaaaggtctattgtctctgtctttttcgcaaaaccaaaaaacacggaggcatc |
220 |
Q |
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| T |
18141920 |
tcttaggcaactctactcttcccatatcaaacaataacatgttccatgaaaggtctattgtttcggtctgtttagcgaaaccaaaaaacatcgaggcatc |
18141821 |
T |
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| Q |
221 |
accttcaaatctgttatgtgacaagtggacaaccaaggagttcaaccttgcca |
273 |
Q |
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| T |
18141820 |
accttcaaacctgttataagacaagtcgacaactaacgagttcaaccttgcca |
18141768 |
T |
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