View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5907_low_35 (Length: 331)

Name: NF5907_low_35
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5907_low_35
NF5907_low_35
[»] chr3 (2 HSPs)
chr3 (19-325)||(27784882-27785188)
chr3 (19-323)||(27780992-27781286)
[»] chr6 (8 HSPs)
chr6 (43-267)||(2162393-2162617)
chr6 (43-102)||(2168721-2168780)
chr6 (43-102)||(2180354-2180413)
chr6 (158-321)||(2207371-2207534)
chr6 (151-320)||(2168503-2168672)
chr6 (151-320)||(2180136-2180305)
chr6 (43-87)||(2207593-2207637)
chr6 (31-96)||(2153484-2153549)
[»] scaffold0286 (2 HSPs)
scaffold0286 (43-119)||(14487-14563)
scaffold0286 (199-267)||(14644-14712)
[»] scaffold0254 (1 HSPs)
scaffold0254 (151-320)||(2025-2194)
[»] chr1 (1 HSPs)
chr1 (242-322)||(7500070-7500150)


Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 27784882 - 27785188
Alignment:
Q  19 cttcaactctccgcataaaagaagagcctcttcaacatgcgcccaaaagcaagaatctatagtcaaaatagcttccacattctttctaggtgtactgttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27784882 cttcaactctccgcataaaagaagagcctcttcaacatgcgcccaaaagcaagaatctatagtcaaaatagcttccacattctttctaggtgtactgttt 27784981  T
Q  119 acatcacttgtgcgattttgtgaatcttcaaataaccactcctccaactgtttgaaatgttcggaccttttgtaattaatatagtctttaccaccttcac 218  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27784982 acatcacttgtgcgattttgagaatcttcaaataaccactcctccaactgtttgaaatgttcggaccttttgttattaatatagtctttaccaccttcac 27785081  T
Q  219 tatagtatttagcaatggatagtggttcaaccattctcctataagtagtccctgcgtataaccaacgggtacgaaaagatgcaccttctttttgaggctt 318  Q
    | |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27785082 tgtagtatttggcaatggatagtggttcaaccattctcctgtaagtagtccctgcgtataaccaacgggtacgaaaagctgcaccttctttttgaggctt 27785181  T
Q  319 catctca 325  Q
    |||||||    
T  27785182 catctca 27785188  T

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Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 27780992 - 27781286
Alignment:
Q  19 cttcaactctccgcataaaagaagagcctcttcaacatgcgcccaaaagcaagaatctatagtcaaaatagcttccacattctttctaggtgtactgttt 118  Q
    ||||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||||   |||||||| ||| |||||||||||||| ||||| |||||    
T  27780992 cttcaactctctgcataaaaggagagcctcttcaacatgtgcccaaaagcacgaatctgaggtcaaaatggctgccacattctttctatgtgtattgttt 27781091  T
Q  119 acatcacttgtgcgattttgtgaatcttcaaataaccactcctccaactgtttgaaatgttcggaccttttgtaattaatatagtctttaccaccttcac 218  Q
      ||||| |||  ||||||         | |  ||||| ||||||||||||||||| ||||  |||||||||| || |  ||||||| |||| ||||  |    
T  27781092 gtatcacatgttggattttc--------ccatcaaccattcctccaactgtttgaagtgtttagaccttttgttatgac-atagtctataccgccttttc 27781182  T
Q  219 tatagtatttagcaatggatagtggttcaaccattctcctataagtagtccctgcgtataaccaacgggtacgaaaagatgcaccttctttttgaggctt 318  Q
    ||||||||| |||||| | ||| ||||||||||||||||| || ||||||||  | |||||||||||||||||||||| |||||||||||||||||| ||    
T  27781183 tatagtattcagcaatagctagaggttcaaccattctcctgta-gtagtcccgccatataaccaacgggtacgaaaagctgcaccttctttttgaggttt 27781281  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 267
Target Start/End: Complemental strand, 2162617 - 2162393
Alignment:
Q  43 agcctcttcaacatgcgcccaaaagcaagaatctatagtcaaaatagcttccacattctttctaggtgtactgtttacatcacttgtgcgattttgt-ga 141  Q
    ||||||||||||||| |||||||||||||||||||||||||||||  ||||||| |||||  ||  |||||||||||  ||| || |  | |||||| ||    
T  2162617 agcctcttcaacatgtgcccaaaagcaagaatctatagtcaaaatcacttccactttcttcttacttgtactgtttaattca-tttttagtttttgtcga 2162519  T
Q  142 atcttcaaataaccactcctccaactgtttgaaatgttcggaccttttgtaattaatatagtctttaccaccttcactatagtatttagcaatggatagt 241  Q
     |||||   |||||| ||||||||   |||||| |||| ||| || |  | ||| | ||| ||||||||||| || |||||||| | |||||| | ||||    
T  2162518 gtcttcctctaaccattcctccaaagttttgaagtgtttggatctatgtttattgacataatctttaccaccatctctatagtactgagcaatagctagt 2162419  T
Q  242 ggttcaaccattctcctataagtagt 267  Q
    |||||||||||||| ||||| |||||    
T  2162418 ggttcaaccattcttctatatgtagt 2162393  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 2168780 - 2168721
Alignment:
Q  43 agcctcttcaacatgcgcccaaaagcaagaatctatagtcaaaatagcttccacattctt 102  Q
    ||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||    
T  2168780 agcctcttcaacatgtgcccaaaagcaagaatctatagtcaaaatcacttccacattctt 2168721  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 2180413 - 2180354
Alignment:
Q  43 agcctcttcaacatgcgcccaaaagcaagaatctatagtcaaaatagcttccacattctt 102  Q
    ||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||    
T  2180413 agcctcttcaacatgtgcccaaaagcaagaatctatagtcaaaatcacttccacattctt 2180354  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 158 - 321
Target Start/End: Complemental strand, 2207534 - 2207371
Alignment:
Q  158 tcctccaactgtttgaaatgttcggaccttttgtaattaatatagtctttaccaccttcactatagtatttagcaatggatagtggttcaaccattctcc 257  Q
    |||||||| | |||||| |||| ||||||||| | ||| | ||| ||||||||||||||  | ||||||| |||||| | || ||||||||||||||| |    
T  2207534 tcctccaattttttgaagtgtttggacctttttttattcacataatctttaccaccttctttgtagtattgagcaatagctaatggttcaaccattcttc 2207435  T
Q  258 tataagtagtccctgcgtataaccaacgggtacgaaaagatgcaccttctttttgaggcttcat 321  Q
    ||||| || | ||  | |||| |||||  ||| ||||| | ||||||||||||| |||||||||    
T  2207434 tataaataattccaccatatagccaacaagtaggaaaaaaggcaccttcttttttaggcttcat 2207371  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 151 - 320
Target Start/End: Complemental strand, 2168672 - 2168503
Alignment:
Q  151 taaccactcctccaactgtttgaaatgttcggaccttttgtaattaatatagtctttaccaccttcactatagtatttagcaatggatagtggttcaacc 250  Q
    |||||| ||||||||   |||||| |||| ||| ||||  | ||| ||||| ||||||||||| || |||||||||| |||||| | |||||||||||||    
T  2168672 taaccattcctccaaagctttgaagtgtttggatctttgtttattgatataatctttaccaccgtctctatagtattgagcaatagctagtggttcaacc 2168573  T
Q  251 attctcctataagtagtccctgcgtataaccaacgggtacgaaaagatgcaccttctttttgaggcttca 320  Q
    ||||| ||||| ||||| ||  || | | ||| || |||||||| |  || |||||| ||||||||||||    
T  2168572 attcttctatatgtagttccaccgaagatccagcgagtacgaaatgcagcgccttctctttgaggcttca 2168503  T

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Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 151 - 320
Target Start/End: Complemental strand, 2180305 - 2180136
Alignment:
Q  151 taaccactcctccaactgtttgaaatgttcggaccttttgtaattaatatagtctttaccaccttcactatagtatttagcaatggatagtggttcaacc 250  Q
    |||||| ||||||||   |||||| |||| ||| ||||  | ||| ||||| ||||||||||| || |||||||||| |||||| | |||||||||||||    
T  2180305 taaccattcctccaaagctttgaagtgtttggatctttgtttattgatataatctttaccaccgtctctatagtattgagcaatagctagtggttcaacc 2180206  T
Q  251 attctcctataagtagtccctgcgtataaccaacgggtacgaaaagatgcaccttctttttgaggcttca 320  Q
    ||||| ||||| ||||| ||  || | | ||| || |||||||| |  || |||||| ||||||||||||    
T  2180205 attcttctatatgtagttccaccgaagatccagcgagtacgaaatgcagcgccttctctttgaggcttca 2180136  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 2207637 - 2207593
Alignment:
Q  43 agcctcttcaacatgcgcccaaaagcaagaatctatagtcaaaat 87  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||    
T  2207637 agcctcttcaacatgtgcccaaaagcaagaatctctagtcaaaat 2207593  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 2153549 - 2153484
Alignment:
Q  31 gcataaaagaagagcctcttcaacatgcgcccaaaagcaagaatctatagtcaaaatagcttccac 96  Q
    |||| ||| |||||||||||||||||  ||||||||||||||||||| ||| ||||| | ||||||    
T  2153549 gcatgaaataagagcctcttcaacatatgcccaaaagcaagaatctagagttaaaattgattccac 2153484  T

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Target: scaffold0286 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 14487 - 14563
Alignment:
Q  43 agcctcttcaacatgcgcccaaaagcaagaatctatagtcaaaatagcttccacattctttctaggtgtactgttta 119  Q
    ||||||||||||||| |||||||||||||||||||||||||||||  ||||||| |||||  ||  |||||||||||    
T  14487 agcctcttcaacatgtgcccaaaagcaagaatctatagtcaaaatcacttccactttcttcttacttgtactgttta 14563  T

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Target: scaffold0286; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 14644 - 14712
Alignment:
Q  199 atagtctttaccaccttcactatagtatttagcaatggatagtggttcaaccattctcctataagtagt 267  Q
    ||| ||||||||||| || |||||||| | |||||| | |||||||||||||||||| ||||| |||||    
T  14644 ataatctttaccaccatctctatagtactgagcaatagctagtggttcaaccattcttctatatgtagt 14712  T

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Target: scaffold0254 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 151 - 320
Target Start/End: Original strand, 2025 - 2194
Alignment:
Q  151 taaccactcctccaactgtttgaaatgttcggaccttttgtaattaatatagtctttaccaccttcactatagtatttagcaatggatagtggttcaacc 250  Q
    |||||| ||||||||   |||||| |||| ||| ||||  | ||| ||||| ||||||||||| || |||||||||| |||||| | |||||||||||||    
T  2025 taaccattcctccaaagctttgaagtgtttggatctttgtttattgatataatctttaccaccgtctctatagtattgagcaatagctagtggttcaacc 2124  T
Q  251 attctcctataagtagtccctgcgtataaccaacgggtacgaaaagatgcaccttctttttgaggcttca 320  Q
    ||||| ||||| ||||| ||  || | | ||| || |||||||| |  || |||||| ||||||||||||    
T  2125 attcttctatatgtagttccaccgaagagccagcgagtacgaaatgcagcgccttctctttgaggcttca 2194  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 322
Target Start/End: Complemental strand, 7500150 - 7500070
Alignment:
Q  242 ggttcaaccattctcctataagtagtccctgcgtataaccaacgggtacgaaaagatgcaccttctttttgaggcttcatc 322  Q
    |||||||||||||||||||||||||| |   |||| | |||||| |||||||  | ||| ||||||||  |||||||||||    
T  7500150 ggttcaaccattctcctataagtagttctgtcgtagagccaacgagtacgaagcggtgcgccttctttccgaggcttcatc 7500070  T

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