View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_low_37 (Length: 328)
Name: NF5907_low_37
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 312
Target Start/End: Original strand, 2420292 - 2420583
Alignment:
| Q |
11 |
cacagaaccaacaacgaacaatcgaaatccatacaggttcagatctaagattcaaaattttccctttcaaaatcgaaatccataaaagcttcacatattt |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2420292 |
cacagaaccaacaacgaacaatcgaaatccatacaggttaatatctaagattcaaaattttccctttcaaaatcgaaatccataaaagcttcacatattt |
2420391 |
T |
|
| Q |
111 |
ctttccagtatacacgcaaagaaagatcctgttgtcataggcttcacatactcgtagcttcatatattatagaaccttagttcatgaaatctttgatcta |
210 |
Q |
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|||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2420392 |
ctttccagtatacacgtaaagaaagatcctgttgtcacaagcttcacatactcgtagcttcatatattatagaaccttagttcatgaaatctttgatcta |
2420491 |
T |
|
| Q |
211 |
tctcttaccnnnnnnnnnnnnnnnnnnnnnctaataaaacttaaccaatatttttacttccatcattattagaactgaggaaattgattgttgaaccttg |
310 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2420492 |
tctcttacc----------ttatttttttcctaataaaacttaaccaatatttttacttccatcattattagaaccgaggaaattgattgttgaaccttg |
2420581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 11 - 312
Target Start/End: Complemental strand, 31872486 - 31872191
Alignment:
| Q |
11 |
cacagaaccaacaacgaacaatcgaaatccatacaggttcagatctaagattcaaaattttccctttcaaaatcgaaatccataaaagcttcacatattt |
110 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
31872486 |
cacataaccaacaacgaacaatcgaaatccatacagtttcagatataagattcaaaactttcactttcaaaatcgaaatccataaaagcttcgcatattt |
31872387 |
T |
|
| Q |
111 |
ctttccagtatacacgcaaagaaagatcctgttgtcataggcttcacatactcgtagcttcatatatta----tagaaccttagttcatgaaatctttga |
206 |
Q |
| |
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|||||| |||||||||||||||| ||| |||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31872386 |
ctttccgatatacacgcaaagaaaaatcatgttgtcacaagcttcacatactcgtagcttcatatattatagatagaaccttagttcatgaaatctttga |
31872287 |
T |
|
| Q |
207 |
tctatctcttaccnnnnnnnnnnnnnnnnnnnnnctaataaaacttaaccaatatttttacttccatcattattagaactgaggaaattgattgttgaac |
306 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31872286 |
tctatctcttacc----------tttttttttttctaataaaacttaaccaatatttttacttccatcattattagaaccgaggaaattgattgttgaac |
31872197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 312
Target Start/End: Complemental strand, 22168901 - 22168610
Alignment:
| Q |
11 |
cacagaaccaacaacgaa-caatcgaaatccatacaggttcagatctaagattcaaaattttccctttcaaaatcgaaatccataaaagcttcacatatt |
109 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
22168901 |
cacagaaccaacaacgaaacaatcgaaatccatacaggttcagatctaagattcaaaattttccctttaaaaatcgaaatccataaaagcttcacatatt |
22168802 |
T |
|
| Q |
110 |
tctttccagtata-cacgcaaagaaagatcctgttgtcataggcttcacatactcgtagcttcatatattatagaaccttagttcatgaaatctttgatc |
208 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22168801 |
tctttccagtatatcacgcaaagaaagatcatgttgtcacaggcttcacatactcgtagcttcatatattatagaaccttagttcatgaaatctttgatc |
22168702 |
T |
|
| Q |
209 |
tatctcttaccnnnnnnnnnnnnnnnnnnnnnctaat-aaaacttaaccaatatttttacttccatcattattagaactgaggaaattgattgttgaacc |
307 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
22168701 |
tatctcttacc-------------ttttttttctaataaaaacttaaccaatatttgtacttccatcattattagaaccgaggaaattgattgttaaacc |
22168615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 48493178 - 48493225
Alignment:
| Q |
54 |
tctaagattcaaaattttccctttcaaaatcgaaatccataaaagctt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48493178 |
tctaagattcaaaattttccctttcaaaatcaaaatccataaaagctt |
48493225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 11 - 312
Target Start/End: Original strand, 2166514 - 2166806
Alignment:
| Q |
11 |
cacagaaccaacaacgaacaatcgaaatccatacaggttcagatctaagattcaaaattttccctttcaaaatcgaaatccataaaagcttcacatattt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2166514 |
cacagaaccaacaacgaacaatcgaaatccatacaagttcagatctaagattcaaaatgttccctttcaaaatcgaaatccataaaagcttcacatattt |
2166613 |
T |
|
| Q |
111 |
ctttccagtata-cacgcaaagaaagatcctgttgtcataggcttcacatactcgtagcttcatatattataga----accttagttcatgaaatctttg |
205 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2166614 |
ctttccagtatatcacgcaaagaaagatcctgttgtcacaggcttcacatactcgtagcttcatatattatagatagaaccttagttcatgaaatctttg |
2166713 |
T |
|
| Q |
206 |
atctatctcttaccnnnnnnnnnnnnnnnnnnnnnctaataaaacttaaccaatatttttacttccatcattattagaactgaggaaattgattgttgaa |
305 |
Q |
| |
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|||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2166714 |
atctat--cttaccttttttttt------------ctaataaaacttaactaatatttttacttccatcattattagaaccgaggaaattgattgttgaa |
2166799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 44554434 - 44554387
Alignment:
| Q |
54 |
tctaagattcaaaattttccctttcaaaatcgaaatccataaaagctt |
101 |
Q |
| |
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||||||||||||||||||||||||||||||| |||| ||||||||||| |
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|
| T |
44554434 |
tctaagattcaaaattttccctttcaaaatcaaaattcataaaagctt |
44554387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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