View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5907_low_4 (Length: 683)

Name: NF5907_low_4
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5907_low_4
NF5907_low_4
[»] chr3 (1 HSPs)
chr3 (18-675)||(50234727-50235384)


Alignment Details
Target: chr3 (Bit Score: 650; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 18 - 675
Target Start/End: Original strand, 50234727 - 50235384
Alignment:
Q  18 actctccacgttcagcaaatacctaaccgaaaccaagttggctgaacaaataaacagtggtaaagccgttaccattcttgcccttgacaacaaagctatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50234727 actctccacgttcagcaaatacctaaccgaaaccaagttggctgaacaaataaacagtggtaaagccgttaccattcttgcccttgacaacaaagctatt 50234826  T
Q  118 gcttctctttctggtaaaccaattgacgccattaaagccgttattgggacccatgttatacctgaattctacgatgagaaaaaactttttgatatcattg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50234827 gcttctctttctggtaaaccaattgacgccattaaagccgttattgggacccatgttatacctgaattctacgatgagaaaaaactttttgatatcattg 50234926  T
Q  218 gaagccatgcacaattgcctacactttcaaccgctccaggtttagccgctaaaatctacgtgtcacttattaatgaaggtgaaatggcatttagttctgc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50234927 gaagccatgcacaattgcctacactttcaaccgctccaggtttagccgctaaaatctacgtgtcacttattaatgaaggtgaaatggcatttagttctgc 50235026  T
Q  318 tgttgaaggctcaaccttcgatgccacgcttgttcaaagcactgaggctgaaccaggcgttgtttcaattctccaggtttcacagccaattgttaaggtt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50235027 tgttgaaggctcaaccttcgatgccacgcttgttcaaagcactgaggctgaaccaggcgttgtttcaattctccaggtttcacagccaattgttaaggtt 50235126  T
Q  418 ggtgcttcagctccggcaactccagcaacactatcaaaaccagcaacacctgcagctgtgtcaacatccagtgccggtgaggttgcaacaccagcagctg 517  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50235127 ggtgcttcagctccagcaactccagcaacactatcaaaaccagcaacacctgcagctgtgtcaacatccagtgccggtgaggttgcaacaccagcagctg 50235226  T
Q  518 tgccaacatccggtgccggtcaggttacaacaccagcagcatcaccttctgtggtgattgctgagtcacctgagagttttggtgatgcacctgctcctgc 617  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50235227 tgccagcatccggtgccggtcaggttacaacaccagcagcatcaccttctgtggtgattgctgagtcacctgagagttttggtgatgcacctgctcctgc 50235326  T
Q  618 tcctagtgcctcttctcgtgccacattcagattcattggtgctgttattgcctttgct 675  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50235327 tcctagtgcctcttctcgtgccacattcagattcattggtgctgttattgcctttgct 50235384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University