View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_low_45 (Length: 301)
Name: NF5907_low_45
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 30031317 - 30031040
Alignment:
| Q |
8 |
gagatgaatgagaaaacaaaaatagcaaattccacagcggtggtaatgctcaacacaagaaatattggaggttaccgatcattgatggaaatgcaaaaac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30031317 |
gagatgaatgagaaaacaaaaatagcaaattccacagcagtggtaatgctcaacacaagaaatattggaggttaccgatcattgatggaaatgcaaaaac |
30031218 |
T |
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| Q |
108 |
cagagttcaaaggtctttgggggaatcaaatttcattcttacaaatatctatacctaagatgagtcaatcaaatatctccaaccctcttaagtttgtttg |
207 |
Q |
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|||||| ||||||||||||||| ||||||||||| |||||||||||| | |||||||| | || |||||| ||||||||||||||| |||||||||| |
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| T |
30031217 |
cagagtccaaaggtctttggggaaatcaaatttctttcttacaaataccaatacctaaagtaagccaatcagtaatctccaaccctcttgagtttgtttg |
30031118 |
T |
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| Q |
208 |
gaattcccgtgaactaattaagaggaagagacgttctttcagtgtttatcttgtagctatgctcatggatttggagat |
285 |
Q |
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|||||| ||||||||||| ||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
30031117 |
gaattctcgtgaactaatcaagaggaagagacattctttcagtgtttatcttatagctttgctcatggatttggagat |
30031040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 30047588 - 30047311
Alignment:
| Q |
8 |
gagatgaatgagaaaacaaaaatagcaaattccacagcggtggtaatgctcaacacaagaaatattggaggttaccgatcattgatggaaatgcaaaaac |
107 |
Q |
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|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
30047588 |
gagatgaatgagaaaacaaaaagagcaaattccacagcagtggtaatgctcaacacaagaaatattggaggttaccaatcattgacagaaatgcaaaaac |
30047489 |
T |
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| Q |
108 |
cagagttcaaaggtctttgggggaatcaaatttcattcttacaaatatctatacctaagatgagtcaatcaaatatctccaaccctcttaagtttgtttg |
207 |
Q |
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| T |
30047488 |
cagagtgcaaaggtctttggggaaatcaaatttctttcttacaaataccaatacctaaagtaagtcaatcagtaatctccaatcctcttgagtttgtttg |
30047389 |
T |
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| Q |
208 |
gaattcccgtgaactaattaagaggaagagacgttctttcagtgtttatcttgtagctatgctcatggatttggagat |
285 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30047388 |
gaattcccgtgaactaatcaagaggaagagacgttctttcagtgtttatcttgtagctatgctcatggatttggagat |
30047311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 30061929 - 30061652
Alignment:
| Q |
8 |
gagatgaatgagaaaacaaaaatagcaaattccacagcggtggtaatgctcaacacaagaaatattggaggttaccgatcattgatggaaatgcaaaaac |
107 |
Q |
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|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
30061929 |
gagatgaatgagaaaacaaaaagagcaaattccacagcagtggtaatgctcaacacaagaaatattggaggttaccaatcattgacagaaatgcaaaaac |
30061830 |
T |
|
| Q |
108 |
cagagttcaaaggtctttgggggaatcaaatttcattcttacaaatatctatacctaagatgagtcaatcaaatatctccaaccctcttaagtttgtttg |
207 |
Q |
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|||||| ||||||||||||||| ||||||||||| |||||||||||| | |||||||| | ||||||||| |||||||| |||||| |||||||||| |
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| T |
30061829 |
cagagtgcaaaggtctttggggaaatcaaatttctttcttacaaataccaatacctaaagtaagtcaatcagtaatctccaatcctcttgagtttgtttg |
30061730 |
T |
|
| Q |
208 |
gaattcccgtgaactaattaagaggaagagacgttctttcagtgtttatcttgtagctatgctcatggatttggagat |
285 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30061729 |
gaattcccgtgaactaatcaagaggaagagacgttctttcagtgtttatcttgtagctatgctcatggatttggagat |
30061652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 8 - 282
Target Start/End: Complemental strand, 30227944 - 30227670
Alignment:
| Q |
8 |
gagatgaatgagaaaacaaaaatagcaaattccacagcggtggtaatgctcaacacaagaaatattggaggttaccgatcattgatggaaatgcaaaaac |
107 |
Q |
| |
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|||| ||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||| |
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| T |
30227944 |
gagaagaatgagaagacaaaaacatcaaattccacagcggtggtaatgctcaacacaagaaatattggaggttaccaatcagtgaaggaaatgcaaaaac |
30227845 |
T |
|
| Q |
108 |
cagagttcaaaggtctttgggggaatcaaatttcattcttacaaatatctatacctaagatgagtcaatcaaatatctccaaccctcttaagtttgtttg |
207 |
Q |
| |
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|||||| ||||||||| ||||| ||| ||||||| |||||||||||| |||||||||||||| | |||||||| |||||||| |||||| |||||||||| |
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| T |
30227844 |
cagagtccaaaggtctatggggaaataaaatttctttcttacaaatacctatacctaagatgtgccaatcaaaaatctccaatcctcttgagtttgtttg |
30227745 |
T |
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| Q |
208 |
gaattcccgtgaactaattaagaggaagagacgttctttcagtgtttatcttgtagctatgctcatggatttgga |
282 |
Q |
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|||| | ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |
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| T |
30227744 |
gaatactcgtgaactaatcaagaggaagagacgttctttcagtgtttatctcatagctttgctcttggatttgga |
30227670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 30221530 - 30221795
Alignment:
| Q |
11 |
atgaatgagaaaacaaaaatagcaaattccacagcggtggtaatgctcaacacaagaaatattggaggttaccgatcattgatggaaatgcaaaaaccag |
110 |
Q |
| |
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||||||||||| ||||||| | ||||||||||||| || ||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| |
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| T |
30221530 |
atgaatgagaagacaaaaaaatcaaattccacagctgtagtaatgctcaacacaagaaatattgaaggttaccaatcattgaaggaaatgcaaaaaccag |
30221629 |
T |
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| Q |
111 |
agttcaaaggtctttgggggaatcaaatttcattcttacaaatatctatacctaagatgagtcaatcaaatatctccaaccctcttaagtttgtttggaa |
210 |
Q |
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||| |||| |||||||||| ||||||||||| |||||||||||| | ||||||||| | || |||||| |||||||| ||||||||||||| |
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| T |
30221630 |
agtccaaaagtctttggggaaatcaaatttctttcttacaaataccaatacctaagctaagccaatca---------gaccctcttgagtttgtttggaa |
30221720 |
T |
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| Q |
211 |
ttcccgtgaactaattaagaggaagagacgttctttcagtgtttatcttgtagctatgctcatggatttggagat |
285 |
Q |
| |
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| ||| | |||| || ||||||||||| |||||| |||||||||| ||| | ||||| || |||||||||| |
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| T |
30221721 |
agctcgtaagttaatcaaaaggaagagacgctctttcggtgtttatctcataggtttgctcttgaatttggagat |
30221795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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