View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_low_46 (Length: 291)
Name: NF5907_low_46
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 1046259 - 1046072
Alignment:
| Q |
19 |
agtagtttgtctgaagaagatattggtgcttgtccatttgcttgataaactggttagaattatatggaaaatgagaatacaatattacatgtgtataata |
118 |
Q |
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| T |
1046259 |
agtagtttgtctgtagaagatattggtgcttgtccatttggttgataaactggttagaattatatggaaaatgagaatacaatattacatgtgtataata |
1046160 |
T |
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| Q |
119 |
aatgtgtagaatgcatacatgtaaatttgtaattaaactagtgaacataaatcaatatcattctgtaacaaaaattcaattccgacct |
206 |
Q |
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| T |
1046159 |
aatgtgtagaatacatacatgtaaatttgtaattaaactagtgaacataaatcaatatcattctgtaacaaaaattcaattcctacct |
1046072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 1046046 - 1045998
Alignment:
| Q |
233 |
tttgttagttaattgctaatttgattaaactaaatgcataccagaatta |
281 |
Q |
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| T |
1046046 |
tttgttagttaattgctaatttgattaaactaaatgcataccagaatta |
1045998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 1071052 - 1070976
Alignment:
| Q |
25 |
ttgtctgaagaagatattggtgcttgtccatttgcttgataaactggttagaattatatggaaaatgagaatacaat |
101 |
Q |
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| T |
1071052 |
ttgtctgtagaagatattggtgcttgcccatttggctgataaactgttgagaataacatggaaaattagcatacaat |
1070976 |
T |
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