View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_low_49 (Length: 279)
Name: NF5907_low_49
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 6812965 - 6812866
Alignment:
| Q |
16 |
agaagctgcacaaggatggagctaattgatagtatcatctacacttgtaagtaacatcatttttataaaattttctttcttctcaaccaggttttgtttt |
115 |
Q |
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| T |
6812965 |
agaagctgcacaaggatggagctaattgatagtatcatctacacttgtaagtaacatcatttttataaaattttctttcttctcaaccaggttttgtttt |
6812866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 198 - 269
Target Start/End: Complemental strand, 6812143 - 6812072
Alignment:
| Q |
198 |
catatgaagaatatatgcctgcaaataactttaagtctttaaccaattctttagtcacacatttgtcctatg |
269 |
Q |
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| T |
6812143 |
catatgaagaatatatgcctgcaaataactttaagtctttaaccaattctttagtcacacatttgtcctatg |
6812072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 6833872 - 6833814
Alignment:
| Q |
16 |
agaagctgcacaaggatggagctaattgatagtatcatctacacttgtaagtaacatca |
74 |
Q |
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| T |
6833872 |
agaagctgcacaaggatggagttgattgatcgtatcatttacacttgtaagtaacatca |
6833814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 6819521 - 6819458
Alignment:
| Q |
16 |
agaagctgcacaaggatggagctaattgatagtatcatctacacttgtaagtaacatcattttt |
79 |
Q |
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||||||||||||| ||||| ||||||||| |||| ||||||||||||||||||||||| |||| |
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| T |
6819521 |
agaagctgcacaacgatggtgctaattgaacgtattatctacacttgtaagtaacatcactttt |
6819458 |
T |
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