View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_low_5 (Length: 646)
Name: NF5907_low_5
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 11 - 631
Target Start/End: Original strand, 1315592 - 1316212
Alignment:
| Q |
11 |
cataggtgaagtgagttccaagaaagtttggtagtagaatggtgttggaaaatgaagttggtcaagtatcttgagttgttgtgtggggatagtgcaagtg |
110 |
Q |
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| T |
1315592 |
cataggtgaagtgagttc-aagaaagtttggtagtagaatggtgttggaaaatgaagttggtcaagtatcttgagttgttgtgtgggaatagtgcaagtg |
1315690 |
T |
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| Q |
111 |
agtaatgtaaatccaaagaatcctcttgggtgtgatgtaggtgaataatgtggctcaaatttaggaagacttgttgcgaggcaggtacgatatgatgcat |
210 |
Q |
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| T |
1315691 |
agtaatgtaaatccaaagaatcctcttgggtgtgatataggtgaataatgtggctcaagtttaggaagacttgttgcgaggcaggtacgatatgatgcat |
1315790 |
T |
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| Q |
211 |
atactcaagtcagccagagaagttgtgttgttttggtgcaaacaagccatgctgtgtttgacattgagggacttagttgggactgtaaaatattgatcaa |
310 |
Q |
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| T |
1315791 |
aaactcaagtcagccagagaagttgtgttgttttggtgcaaacaagccatgctgtgtatgacatggagggacttagttgggactgtaaaatattgatcaa |
1315890 |
T |
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| Q |
311 |
ccggagg-gcttcatcatagtcatccgagtaacgcgacagatagacctcatacaaggcactcatcataccactgatgtccgggtcgattagaaataaagt |
409 |
Q |
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| T |
1315891 |
ccggaggagcttcatcatagtcatccgagtaacgcgacagatagacctcatacaaggcactcatcataccactgatgtccgggtcgattagaaataaagt |
1315990 |
T |
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| Q |
410 |
aggcaaattcattacttccatccacgacttcactctattctttaagaaagtagaaaattcatggatgacaatgatgatttttccctagattatttttcat |
509 |
Q |
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| T |
1315991 |
aggcaaattcattacttccatccacgacttcactctattctttaagaaagtagaaaattcatggatgacaatgatgattttgccctagattatttttcat |
1316090 |
T |
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| Q |
510 |
aaaaatgaaaaatcatagacactggtaagctcttgagcttagagccttccatcaagctcttgagcttggccctggtaagattagagaatggagtaaaaaa |
609 |
Q |
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| T |
1316091 |
aaaaatgaaaaatcatagacactggtaagctcttgagcttagagccttccatcaagctcttgagcttggccctggtaagattagagaatggagtaaaaaa |
1316190 |
T |
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| Q |
610 |
cccttgtggagaatggtaaaat |
631 |
Q |
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| T |
1316191 |
cccttgtggagaatcgtaaaat |
1316212 |
T |
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