View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_low_50 (Length: 276)
Name: NF5907_low_50
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 6 - 256
Target Start/End: Complemental strand, 34066616 - 34066364
Alignment:
| Q |
6 |
attaattaattaatcaattaattgtactgcttttgtaatgaaatttgaggagtgcagcactggagatatttttatctttaaagatcacaatgatatatat |
105 |
Q |
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| T |
34066616 |
attaattaattaatcaattaattgtactgcttttgtaatgaaatttgaggagtgcagcactggagatatttttatctttaaagatcacaatgatatatat |
34066517 |
T |
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| Q |
106 |
gtatcatttcccttaaaaatttatatgtacca--tatttcatgtaaatatagcttatgagttatgacaaggaaatatatatcaggttttcataaaaaaga |
203 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34066516 |
gtatcatttcccttaaaaatttatatgtaccatttatttcatgtaaatatagcttatgagttatgacaaggaaatatatatcaggttttcataaaaaaga |
34066417 |
T |
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| Q |
204 |
aagaaatatatatcagaatgatgaaagaatttcaattataggttcatgttcat |
256 |
Q |
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| T |
34066416 |
aagaaatatatatcaggatgatgaaagaatttcaattataggttcatgttcat |
34066364 |
T |
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