View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5907_low_53 (Length: 264)

Name: NF5907_low_53
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5907_low_53
NF5907_low_53
[»] chr5 (14 HSPs)
chr5 (10-264)||(1045719-1045973)
chr5 (185-259)||(1032804-1032878)
chr5 (185-259)||(1052127-1052201)
chr5 (188-259)||(1057938-1058009)
chr5 (31-85)||(1032733-1032787)
chr5 (31-85)||(1052056-1052110)
chr5 (15-82)||(1070188-1070255)
chr5 (179-246)||(1070269-1070336)
chr5 (185-246)||(1043212-1043273)
chr5 (188-252)||(1064974-1065038)
chr5 (36-85)||(1064905-1064954)
chr5 (10-82)||(1043120-1043192)
chr5 (10-82)||(1049214-1049286)
chr5 (161-245)||(1641786-1641870)


Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 10 - 264
Target Start/End: Original strand, 1045719 - 1045973
Alignment:
Q  10 attattctcaaagggcctctgaaggtggtcttctcatatctgaagctaccggggtctctgaaactgctcaagggtaacttgcaattaatacaaaccaatt 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1045719 attactctcaaagggcctctgaaggtggtcttctcatatctgaagctaccggggtctctgaaactgctcaagggtaacttgcaattaatacaaaccaatt 1045818  T
Q  110 tcataactatctttaacaaacttcaactaattaattctaatgttatatatgtgaaggtcttcaaacaaacctggcatatggacaaaagagcaagtcgaag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1045819 tcataactatctttaacaaacttcaactaattaattctaatgttatatatgtgaaggtcttcaaacacacctggcatatggacaaaagagcaagtcgaag 1045918  T
Q  210 cgtggaaacctatcgtggatgctgttcatgccaaaggtgctacattcttcgatca 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1045919 cgtggaaacctatcgtggatgctgttcatgccaaaggtgctacattcttcgatca 1045973  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 1032804 - 1032878
Alignment:
Q  185 atatggacaaaagagcaagtcgaagcgtggaaacctatcgtggatgctgttcatgccaaaggtgctacattcttc 259  Q
    |||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1032804 atatggactaaagagcatgtcgaggcgtggaaacctattgtggatgctgttcatgccaaaggtgctacattcttc 1032878  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 1052127 - 1052201
Alignment:
Q  185 atatggacaaaagagcaagtcgaagcgtggaaacctatcgtggatgctgttcatgccaaaggtgctacattcttc 259  Q
    |||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1052127 atatggactaaagagcatgtcgaggcgtggaaacctattgtggatgctgttcatgccaaaggtgctacattcttc 1052201  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 1057938 - 1058009
Alignment:
Q  188 tggacaaaagagcaagtcgaagcgtggaaacctatcgtggatgctgttcatgccaaaggtgctacattcttc 259  Q
    ||||| |||||||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||||    
T  1057938 tggactaaagagcacgtcgaggcgtggaaacctattgtggatgctgtccatgccaaaggtgctaccttcttc 1058009  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 1032733 - 1032787
Alignment:
Q  31 aaggtggtcttctcatatctgaagctaccggggtctctgaaactgctcaagggta 85  Q
    ||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||    
T  1032733 aaggtggtcttctcatagctgaagctaccggtgtctctgacactgctcaagggta 1032787  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 1052056 - 1052110
Alignment:
Q  31 aaggtggtcttctcatatctgaagctaccggggtctctgaaactgctcaagggta 85  Q
    ||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||    
T  1052056 aaggtggtcttctcatagctgaagctaccggtgtctctgacactgctcaagggta 1052110  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 1070188 - 1070255
Alignment:
Q  15 tctcaaagggcctctgaaggtggtcttctcatatctgaagctaccggggtctctgaaactgctcaagg 82  Q
    |||||||| |||||| ||||||||||||||||| | ||||||||||| |||||||| || ||||||||    
T  1070188 tctcaaagagcctctaaaggtggtcttctcatagccgaagctaccggtgtctctgataccgctcaagg 1070255  T

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Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 1070269 - 1070336
Alignment:
Q  179 cctggcatatggacaaaagagcaagtcgaagcgtggaaacctatcgtggatgctgttcatgccaaagg 246  Q
    ||||| |||||||| |||||||||||||| || |||||||| || |||||||||||||||| ||||||    
T  1070269 cctggtatatggactaaagagcaagtcgatgcatggaaacccattgtggatgctgttcatgacaaagg 1070336  T

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Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 1043212 - 1043273
Alignment:
Q  185 atatggacaaaagagcaagtcgaagcgtggaaacctatcgtggatgctgttcatgccaaagg 246  Q
    |||||||| ||||||||||| || ||||||||||||||||| ||||| ||||||| ||||||    
T  1043212 atatggactaaagagcaagttgaggcgtggaaacctatcgtagatgcggttcatgacaaagg 1043273  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 1064974 - 1065038
Alignment:
Q  188 tggacaaaagagcaagtcgaagcgtggaaacctatcgtggatgctgttcatgccaaaggtgctac 252  Q
    ||||| |||||||| ||||| || |||||||| || ||||||||||||||||| |||||||||||    
T  1064974 tggactaaagagcatgtcgaggcatggaaacccattgtggatgctgttcatgctaaaggtgctac 1065038  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 1064905 - 1064954
Alignment:
Q  36 ggtcttctcatatctgaagctaccggggtctctgaaactgctcaagggta 85  Q
    |||||||||||| | ||||||||||| |||||||| || |||||||||||    
T  1064905 ggtcttctcataaccgaagctaccggtgtctctgacaccgctcaagggta 1064954  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 1043120 - 1043192
Alignment:
Q  10 attattctcaaagggcctctgaaggtggtcttctcatatctgaagctaccggggtctctgaaactgctcaagg 82  Q
    |||||||||| ||  ||||| |||||||| |||||||| |||||||||| || || || || |||||||||||    
T  1043120 attattctcagagaacctctaaaggtggtattctcatagctgaagctactggtgtttcagacactgctcaagg 1043192  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 1049214 - 1049286
Alignment:
Q  10 attattctcaaagggcctctgaaggtggtcttctcatatctgaagctaccggggtctctgaaactgctcaagg 82  Q
    |||||||||| ||  ||||| |||| || ||||||||| |||||||||| || ||||| || |||||||||||    
T  1049214 attattctcagagaacctctaaaggaggccttctcatagctgaagctactggtgtctcagacactgctcaagg 1049286  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 1641870 - 1641786
Alignment:
Q  161 tgaaggtcttcaaacaaacctggcatatggacaaaagagcaagtcgaagcgtggaaacctatcgtggatgctgttcatgccaaag 245  Q
    ||||||| | |||||| ||| ||||| |||| |||||| ||||| ||| | |||||||| ||  | |||||||||||||||||||    
T  1641870 tgaaggtatccaaacacaccaggcatttggagaaaagatcaagttgaaacttggaaacccattatagatgctgttcatgccaaag 1641786  T

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