View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5907_low_56 (Length: 262)

Name: NF5907_low_56
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5907_low_56
NF5907_low_56
[»] chr7 (6 HSPs)
chr7 (20-262)||(6614407-6614649)
chr7 (73-262)||(46806629-46806818)
chr7 (73-262)||(34641909-34642098)
chr7 (73-262)||(42051163-42051352)
chr7 (73-262)||(21952268-21952457)
chr7 (20-60)||(46806524-46806564)
[»] chr3 (9 HSPs)
chr3 (20-262)||(4064849-4065091)
chr3 (20-262)||(37966553-37966795)
chr3 (20-262)||(28416512-28416753)
chr3 (73-262)||(22399838-22400025)
chr3 (73-262)||(47332518-47332707)
chr3 (73-262)||(33954007-33954197)
chr3 (20-60)||(22399733-22399773)
chr3 (20-60)||(47332772-47332812)
chr3 (20-60)||(33954262-33954302)
[»] chr1 (14 HSPs)
chr1 (73-262)||(2024883-2025072)
chr1 (73-262)||(2842251-2842440)
chr1 (73-262)||(28643892-28644081)
chr1 (73-262)||(32522082-32522271)
chr1 (73-262)||(18412080-18412269)
chr1 (73-262)||(45538895-45539083)
chr1 (73-262)||(38982648-38982837)
chr1 (83-262)||(24777301-24777479)
chr1 (83-262)||(43641274-43641453)
chr1 (20-60)||(2024778-2024818)
chr1 (20-60)||(38982904-38982944)
chr1 (20-60)||(45538790-45538830)
chr1 (20-60)||(41401955-41401995)
chr1 (20-53)||(2842144-2842177)
[»] chr5 (11 HSPs)
chr5 (73-262)||(1596811-1597000)
chr5 (73-262)||(39563325-39563514)
chr5 (73-262)||(5810643-5810832)
chr5 (73-262)||(40832134-40832323)
chr5 (73-262)||(16480034-16480223)
chr5 (134-239)||(22832801-22832906)
chr5 (20-60)||(1597065-1597105)
chr5 (20-60)||(22495340-22495380)
chr5 (20-60)||(40832029-40832069)
chr5 (73-115)||(22495233-22495275)
chr5 (20-60)||(5810897-5810937)
[»] chr8 (6 HSPs)
chr8 (73-262)||(12499813-12500002)
chr8 (73-262)||(6418437-6418626)
chr8 (73-262)||(18383711-18383900)
chr8 (73-262)||(39620202-39620391)
chr8 (20-60)||(12500067-12500107)
chr8 (20-60)||(39620456-39620496)
[»] scaffold0009 (1 HSPs)
scaffold0009 (73-262)||(197008-197197)
[»] chr6 (5 HSPs)
chr6 (73-262)||(18901241-18901430)
chr6 (73-262)||(22512129-22512318)
chr6 (73-262)||(19422430-19422618)
chr6 (20-60)||(19422325-19422365)
chr6 (20-60)||(22512024-22512064)
[»] chr4 (9 HSPs)
chr4 (73-262)||(5945720-5945909)
chr4 (73-262)||(27022728-27022917)
chr4 (84-262)||(34803719-34803897)
chr4 (114-262)||(36318680-36318826)
chr4 (114-262)||(36332889-36333035)
chr4 (20-60)||(27022982-27023022)
chr4 (20-60)||(34803603-34803643)
chr4 (20-60)||(36318922-36318962)
chr4 (20-60)||(36333131-36333171)
[»] chr2 (4 HSPs)
chr2 (73-262)||(40265252-40265441)
chr2 (73-262)||(4649538-4649727)
chr2 (20-60)||(40265147-40265187)
chr2 (20-53)||(4649801-4649834)
[»] scaffold1289 (1 HSPs)
scaffold1289 (153-262)||(1905-2014)


Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 6614407 - 6614649
Alignment:
Q  20 atgaagagtaccctcacaataattaattggaagatcacaatnnnnnnnnnnnngataattcttctctttttcacatctgccagaacataaaaataagtcc 119  Q
    |||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||    
T  6614407 atgaagagtaccctcacaataattaattggaagatcacaataaaaataaaaaagataattcttctctttttcacatctgccagaacataaaaataagtcc 6614506  T
Q  120 atattttaactactccatcaaactaagttgccatttattagaattcagatattcaagagcctccacgaaaagagagagacatttagaggatctactttgt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  6614507 atattttaactactccatcaaactaagttgccatttattagaattcagatattcaagagcctccatgaaaagagagagacatttagaggagctactttgt 6614606  T
Q  220 tcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  6614607 tcctaatgagattttttagagccataggttcatcatgctccac 6614649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 73 - 262
Target Start/End: Original strand, 46806629 - 46806818
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  46806629 gataattctcctctttttcacatctgccagaacataaaaataagttcatattttaaatactccatcaagctaagttgccatttattagaattcagatatt 46806728  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46806729 caagagcctccacgaaaagagagagacgtttagaggagctactttgttcctaatgagattttttagagccataggttcatcatgctccac 46806818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 73 - 262
Target Start/End: Complemental strand, 34642098 - 34641909
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  34642098 gataattttcctctttttcacatctgccagaacataaaaataagtccatattttaaatactccatcaagctaagttgccatttattagaattcagatatt 34641999  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34641998 caagagcctccgcgaaaagagagaggcatttagaggagctactttgttcctaatgagattttttagagccataggttcatcatgctccac 34641909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 73 - 262
Target Start/End: Original strand, 42051163 - 42051352
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  42051163 gataattttcctctttttcacatctgccagaacataaaaataagtccatattttaaatactccatcaagctaagttgccatttattagaattcagatatt 42051262  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42051263 caagagcctccgcgaaaagagagaggcatttagaggagctactttgttcctaatgagattttttagagccataggttcatcatgctccac 42051352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 73 - 262
Target Start/End: Complemental strand, 21952457 - 21952268
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||| ||| || ||||||||| |||||||||||||||||||||    
T  21952457 gataattctcctctttttcacatctgccagaacattaaaataagtccatattttaaatacttcattaagctaagttgctatttattagaattcagatatt 21952358  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21952357 caagagcctccacgaaaagagagagacatttagagaagatactttgttcctaatgagattttttagagccataggttcatcatgctccac 21952268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 46806524 - 46806564
Alignment:
Q  20 atgaagagtaccctcacaataattaattggaagatcacaat 60  Q
    |||||||||||||| ||||||||||||||||||| ||||||    
T  46806524 atgaagagtaccctgacaataattaattggaagaacacaat 46806564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 4065091 - 4064849
Alignment:
Q  20 atgaagagtaccctcacaataattaattggaagatcacaatnnnnnnnnnnnngataattcttctctttttcacatctgccagaacataaaaataagtcc 119  Q
    |||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||    
T  4065091 atgaagagtaccctcacaataattaattggaagatcacaataaaaataaaaaagataattcttctctttttcacatctgccagaacataaaaataagtcc 4064992  T
Q  120 atattttaactactccatcaaactaagttgccatttattagaattcagatattcaagagcctccacgaaaagagagagacatttagaggatctactttgt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  4064991 atattttaactactccatcaaactaagttgccatttattagaattcagatattcaagagcctccatgaaaagagagagacatttagaggagctactttgt 4064892  T
Q  220 tcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4064891 tcctaatgagattttttagagccataggttcatcatgctccac 4064849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 37966553 - 37966795
Alignment:
Q  20 atgaagagtaccctcacaataattaattggaagatcacaatnnnnnnnnnnnngataattcttctctttttcacatctgccagaacataaaaataagtcc 119  Q
    |||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||    
T  37966553 atgaagagtaccctcacaataattaattggaagatcacaataaaaataaaaaagataattcttctctttttcacatctgccagaacataaaaataagtcc 37966652  T
Q  120 atattttaactactccatcaaactaagttgccatttattagaattcagatattcaagagcctccacgaaaagagagagacatttagaggatctactttgt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  37966653 atattttaactactccatcaaactaagttgccatttattagaattcagatattcaagagcctccatgaaaagagagagacatttagaggagctactttgt 37966752  T
Q  220 tcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  37966753 tcctaatgagattttttagagccataggttcatcatgctccac 37966795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 28416753 - 28416512
Alignment:
Q  20 atgaagagtaccctcacaataattaattggaagatcacaatnnnnnnnnnnnngataattcttctctttttcacatctgccagaacataaaaataagtcc 119  Q
    |||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||    
T  28416753 atgaagagtaccctcacaataattaattggaagatcacaataaaaataaaaaagataattcttctctttttcacatctgccagaacataaaaataagtcc 28416654  T
Q  120 atattttaactactccatcaaactaagttgccatttattagaattcagatattcaagagcctccacgaaaagagagagacatttagaggatctactttgt 219  Q
    ||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28416653 atattttaactacac-atcaaactaagttgccatttattataattcagatattcaagagcctccacgaaaagagagagacatttagaggagctactttgt 28416555  T
Q  220 tcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  28416554 tcctaatgagattttttagagccataggttcatcatgctccac 28416512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 73 - 262
Target Start/End: Original strand, 22399838 - 22400025
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  22399838 gataattctcctgtttttcacatctgccagaacataaaaataagtccatattttaactactccatcaagctaagttgtcatttattagaattcagatatt 22399937  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    |||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22399938 caagagcctccacgaaa--agagagacatttagaggagctactttgttcctaatgagattttttagagccataggttcatcatgctccac 22400025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 73 - 262
Target Start/End: Complemental strand, 47332707 - 47332518
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||||| |||||||||||||  |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||| |||||    
T  47332707 gataattctcctctttttcacatacgccagaacataaaaataagttcatattttaaatactccatcaagctaagttgccatttattagaattcatatatt 47332608  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47332607 caagagcctccacgaaaagagagagacatttagaggagctactttgttcctaatgagattttttagagccataggttcatcatgctccac 47332518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 73 - 262
Target Start/End: Complemental strand, 33954197 - 33954007
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  33954197 gataattctcctcattttcacatctgccaggacataaaaataagtccatattttaactactccatcaagctaagttgccacttattagaattcagatatt 33954098  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagatt-ttttagagccataggttcatcatgctccac 262  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||| |||||||| ||||||||||||    
T  33954097 caagagcctccacgaaaagagagagacatttagaggagctactttgttcataatgagatttttttagagtcataggttgatcatgctccac 33954007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 22399733 - 22399773
Alignment:
Q  20 atgaagagtaccctcacaataattaattggaagatcacaat 60  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  22399733 atgaagagtatcctcacaataattaattggaagatcacaat 22399773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 47332812 - 47332772
Alignment:
Q  20 atgaagagtaccctcacaataattaattggaagatcacaat 60  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  47332812 atgaagagtaccctcacaataattaattggaagaacacaat 47332772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 33954302 - 33954262
Alignment:
Q  20 atgaagagtaccctcacaataattaattggaagatcacaat 60  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  33954302 atgaagagtaccatcacaataattaattggaagaacacaat 33954262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 73 - 262
Target Start/End: Original strand, 2024883 - 2025072
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2024883 gataattctcctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaacctaagttgccatttattagaattcagatatt 2024982  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2024983 caagagcctccacgaaaagagagagacatttagaggagctactttgttcctaatgagatttttaagagccataggttcatcatgctccac 2025072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 73 - 262
Target Start/End: Original strand, 2842251 - 2842440
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||  ||||||||||||||||||||||||||||||    
T  2842251 gataaatcttctctttttcacatctgccagaacataaaaataagtccatattttaaacactccatcaagttaagttgccatttattagaattcagatatt 2842350  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2842351 caagagcctccacgaaaagagagagacatttagaggagctactttgttcctaatgagattttttagagccataggttcatcatgctccac 2842440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 73 - 262
Target Start/End: Complemental strand, 28644081 - 28643892
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  28644081 gataattttcctctttttcacatctgccagaacataaaaataagtccatattttaaatactccatcaagctaagttgccatttattagaattcagatatt 28643982  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28643981 caagagcctccgcgaaaagagagaggcatttagaggagctactttgttcctaatgagattttttagagccataggttcatcatgctccac 28643892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 73 - 262
Target Start/End: Complemental strand, 32522271 - 32522082
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  32522271 gataattttcctctttttcacatctgccagaacataaaaataagtccatattttaaatactccatcaagctaagttgccatttattagaattcagatatt 32522172  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32522171 caagagcctccgcgaaaagagagaggcatttagaggagctactttgttcctaatgagattttttagagccataggttcatcatgctccac 32522082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 73 - 262
Target Start/End: Original strand, 18412080 - 18412269
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  18412080 gataattttcctctttttcacatctgccagaacataaatataagtccatattttaaatactccatcaagctaagttgccatttattagaattcagatatt 18412179  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18412180 caagagcctccgcgaaaagagagaggcatttagaggagctactttgttcctaatgagattttttagagccataggttcatcatgctccac 18412269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 73 - 262
Target Start/End: Original strand, 45538895 - 45539083
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  45538895 gataattctcctgtttttcacatctgccagaacataaaaataagtccatattttaagtactccatcaagctaagttgtcatttattagaattcagatatt 45538994  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45538995 caagagcctccacgaaaagagagagacatttagagg-gctactttgttcctaatgagattttttagagccataggttcatcatgctccac 45539083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 73 - 262
Target Start/End: Complemental strand, 38982837 - 38982648
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  38982837 gataattctcctctttttcacatctgccagaacataaaaataagttcatattttaaacactccatcaagctaagttgccatttattagaattcagatatt 38982738  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    |||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38982737 caagagcctccacgaaaagatagagacatttaaaggagctactttgttcctaatgagattttttagagccataggttcatcatgttccac 38982648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 83 - 262
Target Start/End: Original strand, 24777301 - 24777479
Alignment:
Q  83 ctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatattcaagagcctc 182  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||| |||||| | ||||| ||||||||||||||||||||||||||    
T  24777301 ctctttttcacatatgccataacataaaaatgagtccatattttaaatactccatcaagctaagt-gtcatttgttagaattcagatattcaagagcctc 24777399  T
Q  183 cacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24777400 cacgaaaagagagagacatttagagtagctactttgttcataatgagattttttagagccataggttcatcatgctccac 24777479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 83 - 262
Target Start/End: Complemental strand, 43641453 - 43641274
Alignment:
Q  83 ctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatattcaagagcctc 182  Q
    ||||||||||||| ||||| ||| ||||||| |||||||||||||| ||||||||||| |||||||| ||| | ||||||||||||||||||||||||||    
T  43641453 ctctttttcacatatgccataacctaaaaatgagtccatattttaaatactccatcaagctaagttgtcatctgttagaattcagatattcaagagcctc 43641354  T
Q  183 cacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43641353 cacgaaaagagagagacatttagaagagctactttgttcctaatgagattttttagagccataggttcatcatgttccac 43641274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 2024778 - 2024818
Alignment:
Q  20 atgaagagtaccctcacaataattaattggaagatcacaat 60  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2024778 atgaagagtaccctcacaataattaattggaagatcacaat 2024818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 38982944 - 38982904
Alignment:
Q  20 atgaagagtaccctcacaataattaattggaagatcacaat 60  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  38982944 atgaagagtaccctcacaataattaattggaagaacacaat 38982904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 45538790 - 45538830
Alignment:
Q  20 atgaagagtaccctcacaataattaattggaagatcacaat 60  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  45538790 atgaagagtatcctcacaataattaattggaagatcacaat 45538830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 41401995 - 41401955
Alignment:
Q  20 atgaagagtaccctcacaataattaattggaagatcacaat 60  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  41401995 atgaagagtactctcacaataattaattggaagaacacaat 41401955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 2842144 - 2842177
Alignment:
Q  20 atgaagagtaccctcacaataattaattggaaga 53  Q
    ||||||||||| ||||||||||||||||||||||    
T  2842144 atgaagagtacactcacaataattaattggaaga 2842177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 73 - 262
Target Start/End: Complemental strand, 1597000 - 1596811
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1597000 gataattctcctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaagctaagttgccatttattagaattcagatatt 1596901  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1596900 caagagcctccacgaaaagatagagacatttagaggagctactttgttcctaatgagattttttagagccatagtttcatcatgctccac 1596811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 73 - 262
Target Start/End: Complemental strand, 39563514 - 39563325
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  39563514 gataattctcctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaagctaagttgtcatttattagaattcagatatt 39563415  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39563414 caagagcctccacgaaaagagagagacatttagaggagctactttgttcctaatgagattttttagagtcataggttcatcatgctccac 39563325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 73 - 262
Target Start/End: Complemental strand, 5810832 - 5810643
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  5810832 gataattctcctctttttcacatctgccagaacataaaaataagttcatattttaaatactccatcaagctaagttgccatttattagaattcagatatt 5810733  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5810732 caagagcctccacgaaaagagagagacgtttagaggagctactttgttcctaatgagattttttagagccataggttcatcatgctccac 5810643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 73 - 262
Target Start/End: Original strand, 40832134 - 40832323
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40832134 gataattctcctctttttcatatctgccagaacataaaaataagtccatattttaactactccatcaacctaagttgccatttattagaattcagatatt 40832233  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40832234 caagagcctccacaaaaagagagagacatttagaggagctactttgttcctaatgagatttttaagagccataggttcatcatgctccac 40832323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 73 - 262
Target Start/End: Original strand, 16480034 - 16480223
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  16480034 gataattttcctctttttcacatctgccagaacataaaaataagtccatattttaaatactccatcaagctaagttgccatttattagaattcagatatt 16480133  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16480134 caagagcctccgcgaaaagagagaggcatttagaggagctactttgttcctaatgagattttttagagccataggttcatcatgctccac 16480223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 239
Target Start/End: Complemental strand, 22832906 - 22832801
Alignment:
Q  134 ccatcaaactaagttgccatttattagaattcagatattcaagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattt 233  Q
    |||| ||||||||||  ||||| ||||||| ||  ||||| ||||||| || | ||||||||  ||||||||| || ||||||||||||| |||||||||    
T  22832906 ccattaaactaagttatcatttgttagaatccaattattcgagagccttcatggaaagagaggaacatttagaagagctactttgttcctgatgagattt 22832807  T
Q  234 tttaga 239  Q
    ||||||    
T  22832806 tttaga 22832801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 1597105 - 1597065
Alignment:
Q  20 atgaagagtaccctcacaataattaattggaagatcacaat 60  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  1597105 atgaagagtaccctcacaataattaattgaaagatcacaat 1597065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 22495380 - 22495340
Alignment:
Q  20 atgaagagtaccctcacaataattaattggaagatcacaat 60  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  22495380 atgaagagtaccctcacaataattaattggaagaacacaat 22495340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 40832029 - 40832069
Alignment:
Q  20 atgaagagtaccctcacaataattaattggaagatcacaat 60  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  40832029 atgaagagtaccctcacaataattaattggaagatcgcaat 40832069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 22495275 - 22495233
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataa 115  Q
    ||||||||| || ||||||||||||||||||||||||||||||    
T  22495275 gataattctcctatttttcacatctgccagaacataaaaataa 22495233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 5810937 - 5810897
Alignment:
Q  20 atgaagagtaccctcacaataattaattggaagatcacaat 60  Q
    |||||||||||||| ||||||||||||||||||| ||||||    
T  5810937 atgaagagtaccctgacaataattaattggaagaacacaat 5810897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 73 - 262
Target Start/End: Complemental strand, 12500002 - 12499813
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||  ||||||||||||||||||||||    
T  12500002 gataattctcctctttttcacatctgccagaacataaaaataagtccatattttaaatactccatcaagctaagttttcatttattagaattcagatatt 12499903  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12499902 caagagcctccacgaaaagagagagacatttagaggagctactttgttcctaatgagattttttagagccataggttcatcatgctccac 12499813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 73 - 262
Target Start/End: Original strand, 6418437 - 6418626
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  6418437 gataattttcctctttttcacatctgccagaacataaaaataagtccatattttaaatactccatcaagctaagttgccatttattagaattcagatatt 6418536  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6418537 caagagcctccgcgaaaagagagaggcatttagaggagctactttgttcctaatgagattttttagagccataggttcatcatgctccac 6418626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 73 - 262
Target Start/End: Complemental strand, 18383900 - 18383711
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  18383900 gataattttcctctttttcacatctgccagaacataaaaataagtccatattttaaatactccatcaagctaagttgccatttattagaattcagatatt 18383801  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18383800 caagagcctccgcgaaaagagagaggcatttagaggagctactttgttcctaatgagattttttagagccataggttcatcatgctccac 18383711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 73 - 262
Target Start/End: Complemental strand, 39620391 - 39620202
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  39620391 gataattctcctctttttcacatctgccagaacataaaaataagttcatattttaaatactccatcaagctaagttgccatttattagaattcagatatt 39620292  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39620291 caagagcctccacaaaaagagagagacgtttagaggagctactttgttcctaatgagattttttagagccataggttcatcatgctccac 39620202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 12500107 - 12500067
Alignment:
Q  20 atgaagagtaccctcacaataattaattggaagatcacaat 60  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  12500107 atgaagagtaccctcacaataattaattgaaagaacacaat 12500067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 39620496 - 39620456
Alignment:
Q  20 atgaagagtaccctcacaataattaattggaagatcacaat 60  Q
    |||||||||||||| ||||||||||||||||||| ||||||    
T  39620496 atgaagagtaccctgacaataattaattggaagaacacaat 39620456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 73 - 262
Target Start/End: Complemental strand, 197197 - 197008
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  197197 gataattttcctctttttcacatctgccagaacataaaaataagtccatattttaaatactccatcaagctaagttgccatttattagaattcagatatt 197098  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  197097 caagagcctccgcgaaaagagagaggcatttagaggagctactttgttcctaatgagattttttagagccataggttcatcatgctccac 197008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 73 - 262
Target Start/End: Complemental strand, 18901430 - 18901241
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  18901430 gataattttcctctttttcacatctgccagaacataaaaataagtccatattttaaatactccatcaagctaagttgccatttattagaattcagatatt 18901331  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18901330 caagagcctccgcgaaaagagagaggcatttagaggagctactttgttcctaatgagattttttagagccataggttcatcatgctccac 18901241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 73 - 262
Target Start/End: Original strand, 22512129 - 22512318
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  22512129 gataattctcctctttttcacatctgccagaacataaaaataagttcatattttaaatactccatcaagctaagttgccatttattagaattcagatatt 22512228  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||||| |||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22512229 caagagcctccacaaaaagaaagagacatttaaaggagctactttgttcctaatgagattttttagagccataggttcatcatgctccac 22512318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 73 - 262
Target Start/End: Original strand, 19422430 - 19422618
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||||| || |||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  19422430 gataattctcctatttttcacatctgccagaacataaaaataagttcatattttaaatactccatcaagctaagttgtcatttattagaattcagatatt 19422529  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||| ||||||||| |||||||||||||||| ||||    
T  19422530 caagagcctccacgaaaagagagagacatttagaggagctaatttgttcataatgaga-tttttagagtcataggttcatcatgcaccac 19422618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 19422325 - 19422365
Alignment:
Q  20 atgaagagtaccctcacaataattaattggaagatcacaat 60  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  19422325 atgaagagtaccctcacaataattaattgaaagaacacaat 19422365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 22512024 - 22512064
Alignment:
Q  20 atgaagagtaccctcacaataattaattggaagatcacaat 60  Q
    ||||||||||||||||||||||||||| |||||| ||||||    
T  22512024 atgaagagtaccctcacaataattaatgggaagaacacaat 22512064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 73 - 262
Target Start/End: Original strand, 5945720 - 5945909
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5945720 gataattttcctctttttcacatctgccagaacataaaaataagtccatattttaaatactccatcaaactaagttgccatttattagaattcagatatt 5945819  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||| ||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5945820 caagagcctccgcgaaaagagagaggcatttagaggggctactttgttcctaatgagattttttagagccataggttcatcatgctccac 5945909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 73 - 262
Target Start/End: Complemental strand, 27022917 - 27022728
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  27022917 gataattctcctccttttcacatctgccagaacataaaaataagtccatattttaaatactccatcaagctaagttgtcatttattagaattcagatatt 27022818  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    |||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27022817 caagagcctccacgaaaagagagagacatttagaggagtttctttgttcctaatgagattttttagagccataggttcatcatgctccac 27022728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 84 - 262
Target Start/End: Original strand, 34803719 - 34803897
Alignment:
Q  84 tctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatattcaagagcctcc 183  Q
    |||||||||||| ||||||||||| |||||||||||||||||||| ||||  ||||| ||||||||| |||||||||||||||||||||||||||| |||    
T  34803719 tctttttcacatatgccagaacattaaaataagtccatattttaaatactttatcaagctaagttgcaatttattagaattcagatattcaagagcatcc 34803818  T
Q  184 acgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34803819 acgaaaagagagagacatttagaggagctactttgttcctaatgagattttttagagccataggttcatcatgctccac 34803897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 114 - 262
Target Start/End: Complemental strand, 36318826 - 36318680
Alignment:
Q  114 aagtccatattttaactactccatcaaactaagttgccatttattagaattcagatattcaagagcctccacgaaaagagagagacatttagaggatcta 213  Q
    ||||||||||||||| ||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||| |||    
T  36318826 aagtccatattttaaatactccatcaagctaagttgtcatttattagaattcatatattcaagagcctccacgaaaaga--gagacatttagaggagcta 36318729  T
Q  214 ctttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  36318728 ctttgttcctaatgagattttttagagtcataggtccatcatgctccac 36318680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 114 - 262
Target Start/End: Complemental strand, 36333035 - 36332889
Alignment:
Q  114 aagtccatattttaactactccatcaaactaagttgccatttattagaattcagatattcaagagcctccacgaaaagagagagacatttagaggatcta 213  Q
    ||||||||||||||| ||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||| |||    
T  36333035 aagtccatattttaaatactccatcaagctaagttgtcatttattagaattcatatattcaagagcctccacgaaaaga--gagacatttagaggagcta 36332938  T
Q  214 ctttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  36332937 ctttgttcctaatgagattttttagagtcataggtccatcatgctccac 36332889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 27023022 - 27022982
Alignment:
Q  20 atgaagagtaccctcacaataattaattggaagatcacaat 60  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  27023022 atgaagagtaccctcacaataattaattgaaagaacacaat 27022982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 34803603 - 34803643
Alignment:
Q  20 atgaagagtaccctcacaataattaattggaagatcacaat 60  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  34803603 atgaagagtacactcacaataattaattggaagaacacaat 34803643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 36318962 - 36318922
Alignment:
Q  20 atgaagagtaccctcacaataattaattggaagatcacaat 60  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  36318962 atgaagagtaccctcagaataattaattggaagaacacaat 36318922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 36333171 - 36333131
Alignment:
Q  20 atgaagagtaccctcacaataattaattggaagatcacaat 60  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  36333171 atgaagagtaccctcagaataattaattggaagaacacaat 36333131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 73 - 262
Target Start/End: Original strand, 40265252 - 40265441
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  40265252 gataattctcctccttttcacatctgccagaacataaaaataagtccatattttaaatactccatcaagctaagttgtcatttattagaattcagatatt 40265351  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40265352 caagagcctccacgaaaagagagagacatttagaggagctactttgttcctaatgagattttttagagccataggtacatcatgctccac 40265441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 73 - 262
Target Start/End: Complemental strand, 4649727 - 4649538
Alignment:
Q  73 gataattcttctctttttcacatctgccagaacataaaaataagtccatattttaactactccatcaaactaagttgccatttattagaattcagatatt 172  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||| |||||||    
T  4649727 gataattctcctctttttcacatctgccagaacataaaaataagtccatattttaaacactccatcaagctaagttgccatttattagaatttagatatt 4649628  T
Q  173 caagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcatcatgctccac 262  Q
    |||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4649627 caagagcctccacgaaaagatagagacatttaaaggagctactttgttcctaatgagattttttagagccataggttcatcatgttccac 4649538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 40265147 - 40265187
Alignment:
Q  20 atgaagagtaccctcacaataattaattggaagatcacaat 60  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  40265147 atgaagagtaccctcacaataattaattgaaagaacacaat 40265187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 4649834 - 4649801
Alignment:
Q  20 atgaagagtaccctcacaataattaattggaaga 53  Q
    ||||||||||| ||||||||||||||||||||||    
T  4649834 atgaagagtacactcacaataattaattggaaga 4649801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1289 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold1289
Description:

Target: scaffold1289; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 153 - 262
Target Start/End: Complemental strand, 2014 - 1905
Alignment:
Q  153 tttattagaattcagatattcaagagcctccacgaaaagagagagacatttagaggatctactttgttcctaatgagattttttagagccataggttcat 252  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| | |||||||||    
T  2014 tttatttgaattcagatattcaagagcctccacgaaaagagagagacatttaaaggagctactttgttcctaatgagattttttagagtcttaggttcat 1915  T
Q  253 catgctccac 262  Q
    ||||||||||    
T  1914 catgctccac 1905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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