View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_low_58 (Length: 257)
Name: NF5907_low_58
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_low_58 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 44719096 - 44719341
Alignment:
| Q |
12 |
agtagcataggctttacctaacatttggtgaaatgttaatgaacaaaattacatttttaacatttttcaaatgttactaaatctcaagtatgttgtagtg |
111 |
Q |
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| T |
44719096 |
agtaacataggctttacctaacatttggtgaaatgttaatgaacaaaattacatttttaacatttttcaaatgttactaaatctcaagtatgttgtagtg |
44719195 |
T |
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| Q |
112 |
ataaatatagtgtagattgacacttccttgtcatcttctcaaaatagagttagcattggtatgtgtttacatgatgatgaaggacatttaatgtttgcta |
211 |
Q |
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| T |
44719196 |
ataaatatagtgtagattgacacttccttgtaatcttctcaaaatagagttagcattggtatgtgtttacatgatgatgaaggacatttaatgtctgtta |
44719295 |
T |
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| Q |
212 |
gaacgctttggataactccgttgtgctcaatcgaaattggggaagc |
257 |
Q |
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| T |
44719296 |
gaacgctttggataactccgttgtgctcaatcgaaattggggaagc |
44719341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 5498497 - 5498455
Alignment:
| Q |
71 |
acatttttcaaatgttactaaatctcaagtatgttgtagtgat |
113 |
Q |
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| T |
5498497 |
acattttttaattgttactaaatctcaattatgttgtagtgat |
5498455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 9633527 - 9633564
Alignment:
| Q |
75 |
ttttcaaatgttactaaatctcaagtatgttgtagtga |
112 |
Q |
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| T |
9633527 |
ttttcaagtgttactaaatctcaattatgttgtagtga |
9633564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 27259530 - 27259566
Alignment:
| Q |
75 |
ttttcaaatgttactaaatctcaagtatgttgtagtg |
111 |
Q |
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| T |
27259530 |
ttttcaattgttactaaatctcaattatgttgtagtg |
27259566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 7732268 - 7732226
Alignment:
| Q |
69 |
taacatttttcaaatgttactaaatctcaagtatgttgtagtg |
111 |
Q |
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| T |
7732268 |
taacatttttcaagtgttactaaatctcatatatgttgtagtg |
7732226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 8764 - 8723
Alignment:
| Q |
71 |
acatttttcaaatgttactaaatctcaagtatgttgtagtga |
112 |
Q |
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| T |
8764 |
acatttttcaactgttactaaatcttaattatgttgtagtga |
8723 |
T |
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