View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_low_61 (Length: 253)
Name: NF5907_low_61
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_low_61 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 66 - 253
Target Start/End: Original strand, 34289250 - 34289437
Alignment:
| Q |
66 |
ttagtattacagaccttaattataacactaacctaattcaacaccgagtttcgaaacgacattttctccattcgcaagatccgaacttaagactttttat |
165 |
Q |
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| T |
34289250 |
ttagtgttacagaccttaattataacactaacttaattcaacacagactctccaaacgacattttctccattcgcaagattcgaacttaagactttttat |
34289349 |
T |
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| Q |
166 |
aagaaattcaagtttgttacactcaaaccaatgtaatgttagcactttaatataattttttcttatataaaaatataaataccaatgc |
253 |
Q |
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| T |
34289350 |
aagaaatttaagtttgttacactcaaaccaatgtaatgttggcactttaatataattttttcttatataaaaatataaataccaatgc |
34289437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 253
Target Start/End: Original strand, 34301716 - 34301820
Alignment:
| Q |
148 |
gaacttaagactttttataagaaattcaagtttgttacactcaaaccaatgtaatgttagcactttaatataattttttcttatataaaaatataaatac |
247 |
Q |
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| T |
34301716 |
gaacttaagacttttcttaagcgattcaagcttgttacacgcaaaccaatgcaatgttgccatttcactataa-tttttcttatataaaaatataaatac |
34301814 |
T |
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| Q |
248 |
caatgc |
253 |
Q |
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| T |
34301815 |
gaatgc |
34301820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 34289212 - 34289252
Alignment:
| Q |
8 |
agtgagaagaataattacatgagggattggaaggagaatta |
48 |
Q |
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| T |
34289212 |
agtgaaaagaataattacatgagggatttgaaggagaatta |
34289252 |
T |
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