View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_low_7 (Length: 609)
Name: NF5907_low_7
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 551; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 24 - 590
Target Start/End: Complemental strand, 867173 - 866607
Alignment:
| Q |
24 |
ctcatcactcgtcagagctgtgtgagtcaaacaaaccactgaaacgcaaaaatgcttcaaccccgttccctccgcccttacatttccatctcctcaaacc |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
867173 |
ctcatcactcgtcagagctgtgtgagtcaaacaaaccactgaaacgcaaaaatgcttcaaccccgttccctccgcccttacatttccatctcctcaaacc |
867074 |
T |
|
| Q |
124 |
ctaaccctaaccctaatcctagagacacattttctcgtttcaactccaacaatgaattcccttcatcatcttcaaccacatcatcatcctcctcctccag |
223 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
867073 |
ctaaccctaaccctaaccctagagacacattttctcgtttcaactccaacaatgaattcccttcatcatcttcaacctcatcatcctcctcctcctccag |
866974 |
T |
|
| Q |
224 |
atctctcaaaaaccctacaacattctcccacaataccctaatcgcaatttcccttatccccgccatactcttcatcctcgacctctcttccaccaccgtc |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
866973 |
atctctcaaaaaccctacaacattctcccacaataccctaatcgcaatttcccttatccccgccatactcttcatcctcgacctctcttccaccaccgtc |
866874 |
T |
|
| Q |
324 |
acaaccaccttaatcatcggcctcatgatctcctacatcctcgaccttctcaatttcaaacaacctgccttcatctctcttcacttaaccctaatccttt |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
866873 |
acaaccaccttaatcatcggcctcatgatctcctacatcctcgaccttctcaatttcaaacaacctgccttcatctctcttcacttaaccctaatccttt |
866774 |
T |
|
| Q |
424 |
ctcaattcactttctttctcacctcctctttttctttatacaccaccttcaattcaaatcttaccttaacaattctctcttctttcctcaccgcacacac |
523 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
866773 |
ctcaattcactttctttctcacctcctccttttctttatacaccaccttcaattcaaatcttaccttaacaattctctcttctttcctcaccgcacacac |
866674 |
T |
|
| Q |
524 |
taccttccttataagtatctggtcttctcttcaattcaaattcctcctcctcgaaaaccccgctatc |
590 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
866673 |
taccttccttataagtatctggtcttctcttcaattcaaattcctcctcctcgaaaaccccgctatc |
866607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 24 - 590
Target Start/End: Complemental strand, 1228450 - 1227884
Alignment:
| Q |
24 |
ctcatcactcgtcagagctgtgtgagtcaaacaaaccactgaaacgcaaaaatgcttcaaccccgttccctccgcccttacatttccatctcctcaaacc |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1228450 |
ctcatcactcgtcagagctgtgtgagtcaaacaaaccactgaaacgcaaaaatgcttcaaccccgttccctccgcccttacatttccatctcctcaaacc |
1228351 |
T |
|
| Q |
124 |
ctaaccctaaccctaatcctagagacacattttctcgtttcaactccaacaatgaattcccttcatcatcttcaaccacatcatcatcctcctcctccag |
223 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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|
| T |
1228350 |
ctaaccctaaccctaaccctagagacacattttctcgtttcaactccaacaatgaattcccttcatcatcttcaacctcatcatcctcctcctcctccag |
1228251 |
T |
|
| Q |
224 |
atctctcaaaaaccctacaacattctcccacaataccctaatcgcaatttcccttatccccgccatactcttcatcctcgacctctcttccaccaccgtc |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1228250 |
atctctcaaaaaccctacaacattctcccacaataccctaatcgcaatttcccttatccccgccatactcttcatcctcgacctctcttccaccaccgtc |
1228151 |
T |
|
| Q |
324 |
acaaccaccttaatcatcggcctcatgatctcctacatcctcgaccttctcaatttcaaacaacctgccttcatctctcttcacttaaccctaatccttt |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1228150 |
acaaccaccttaatcatcggcctcatgatctcctacatcctcgaccttctcaatttcaaacaacctgccttcatctctcttcacttaaccctaatccttt |
1228051 |
T |
|
| Q |
424 |
ctcaattcactttctttctcacctcctctttttctttatacaccaccttcaattcaaatcttaccttaacaattctctcttctttcctcaccgcacacac |
523 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1228050 |
ctcaattcactttctttctcacctcctccttttctttatacaccaccttcaattcaaatcttaccttaacaattctctcttctttcctcaccgcacacac |
1227951 |
T |
|
| Q |
524 |
taccttccttataagtatctggtcttctcttcaattcaaattcctcctcctcgaaaaccccgctatc |
590 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1227950 |
taccttccttataagtatctggtcttctcttcaattcaaattcctcctcctcgaaaaccccgctatc |
1227884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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