View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5907_low_72 (Length: 239)

Name: NF5907_low_72
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5907_low_72
NF5907_low_72
[»] chr7 (3 HSPs)
chr7 (119-226)||(1321609-1321716)
chr7 (18-60)||(1321775-1321817)
chr7 (119-150)||(26926290-26926321)
[»] chr8 (2 HSPs)
chr8 (155-226)||(32108860-32108931)
chr8 (120-150)||(24630284-24630314)
[»] chr6 (2 HSPs)
chr6 (155-218)||(22962413-22962476)
chr6 (155-218)||(23825917-23825980)
[»] chr3 (1 HSPs)
chr3 (184-226)||(3162559-3162601)
[»] chr4 (1 HSPs)
chr4 (119-151)||(25144275-25144307)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 119 - 226
Target Start/End: Complemental strand, 1321716 - 1321609
Alignment:
Q  119 gcactccaagtgtttgatgaaatatttgaatgtttgaagagtttgattcagctagatgaaaatatttaggttgtataaaattgtattattatgttgtgtc 218  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1321716 gcactccaagtgtttgatgaaatgtttgaatgtttgaacagtttgattcagctagatgaaaatatttaggttgtataaaattgtattattatgttgtgtc 1321617  T
Q  219 attatttt 226  Q
     |||||||    
T  1321616 gttatttt 1321609  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 1321817 - 1321775
Alignment:
Q  18 aaatgttatgaatcattgttagacaagatttaagttaattaaa 60  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  1321817 aaatgttatgaatcattgttagactagatttaagttaattaaa 1321775  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 150
Target Start/End: Original strand, 26926290 - 26926321
Alignment:
Q  119 gcactccaagtgtttgatgaaatatttgaatg 150  Q
    ||||||||||||||||||||||||||||||||    
T  26926290 gcactccaagtgtttgatgaaatatttgaatg 26926321  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 32108931 - 32108860
Alignment:
Q  155 aagagtttgattcagctagatgaaaatatttaggttgtataaaattgtattattatgttgtgtcattatttt 226  Q
    ||||||||||||| |  |||||||||| |||||||||||| |||||||||||| |||| |||||||||||||    
T  32108931 aagagtttgattcggacagatgaaaatgtttaggttgtattaaattgtattataatgtagtgtcattatttt 32108860  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 150
Target Start/End: Complemental strand, 24630314 - 24630284
Alignment:
Q  120 cactccaagtgtttgatgaaatatttgaatg 150  Q
    |||||||||||||||||||||||||||||||    
T  24630314 cactccaagtgtttgatgaaatatttgaatg 24630284  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 22962476 - 22962413
Alignment:
Q  155 aagagtttgattcagctagatgaaaatatttaggttgtataaaattgtattattatgttgtgtc 218  Q
    |||| |||||||| |||||||||| || |||||||||||| |||||||||||||||||||||||    
T  22962476 aagattttgattcggctagatgaagatgtttaggttgtattaaattgtattattatgttgtgtc 22962413  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 23825917 - 23825980
Alignment:
Q  155 aagagtttgattcagctagatgaaaatatttaggttgtataaaattgtattattatgttgtgtc 218  Q
    |||| |||||||| |||||||||| || |||||||||||| |||||||||||||||||||||||    
T  23825917 aagattttgattcggctagatgaagatgtttaggttgtattaaattgtattattatgttgtgtc 23825980  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 3162601 - 3162559
Alignment:
Q  184 ttaggttgtataaaattgtattattatgttgtgtcattatttt 226  Q
    ||||||||||| ||||||||||||||||| |||||||||||||    
T  3162601 ttaggttgtattaaattgtattattatgtagtgtcattatttt 3162559  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 151
Target Start/End: Original strand, 25144275 - 25144307
Alignment:
Q  119 gcactccaagtgtttgatgaaatatttgaatgt 151  Q
    ||||||||||||||||||||||| |||||||||    
T  25144275 gcactccaagtgtttgatgaaatgtttgaatgt 25144307  T

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