View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_low_76 (Length: 237)
Name: NF5907_low_76
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_low_76 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 32268348 - 32268128
Alignment:
| Q |
17 |
acaaaatgtgtttgggagtctcactatgatgctcaggttaagaagaattttcattaccgagctcaacaccgtttttcagatatgatgttaacattaagac |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32268348 |
acaaaatgtgtttgggagtctcactatgatgctcaggttaagaagaattttcattaccgagctcaacaccgtttttcagatatgatgttaacattaagat |
32268249 |
T |
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| Q |
117 |
gaaaacatgctaaaaagcctgaatggatattccaaagtggatagcagctcaacacatttgatttacctttgtttattggttcctagtatgtgatactcca |
216 |
Q |
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| T |
32268248 |
gaaaacatgctaaaaagcctgaatggatattccaaagtggatagcagctcaacacatttgatttacctttgtttattggttcctagtatgtgatactcca |
32268149 |
T |
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| Q |
217 |
aataatatactttgtttgtgt |
237 |
Q |
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||||||||||||||||||||| |
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| T |
32268148 |
aataatatactttgtttgtgt |
32268128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 32274473 - 32274335
Alignment:
| Q |
20 |
aaatgtgtttgggagtctcactatgatgctcaggttaagaagaattttcattaccgagctcaacaccgtttttcagatatgatgttaacattaagacgaa |
119 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||| |
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| T |
32274473 |
aaatgtgtttgggagtctcactacgatgctcaggttaagaagaattttcattaccgagctcaacaccgtttatcatatatgatgtcaacattaagacgaa |
32274374 |
T |
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| Q |
120 |
aacatgctaaaaagcctgaatggatattccaaagtggatag |
160 |
Q |
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| T |
32274373 |
aacatgttaaaaagcctgaatgg--attccaaagtggatag |
32274335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 24552605 - 24552480
Alignment:
| Q |
17 |
acaaaatgtgtttgggagtctcactatgatgctcaggttaagaagaattttcattaccgagctcaacaccgtttttcagatatgatgttaacattaagac |
116 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| |||| ||||| |
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| T |
24552605 |
acaaaatgtgtttgggagtctcgccatgatgctcaggttaagaagaattttcattatccagctcaacaccgtttccaagatatgatgtcaacaataagag |
24552506 |
T |
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| Q |
117 |
gaaaacatgctaaaaagcctgaatgg |
142 |
Q |
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||| ||||||| | | ||||||||| |
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| T |
24552505 |
caaagcatgctagagatcctgaatgg |
24552480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 32272409 - 32272340
Alignment:
| Q |
168 |
acacatttgatttacctttgtttattggttcctagtatgtgatactccaaataatat-actttgtttgtgt |
237 |
Q |
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|||| ||| |||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
32272409 |
acaccttttatttacctgtgtttattggttcctagtatgtgatactcc-aataatataactttgtttgtgt |
32272340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 23964160 - 23964282
Alignment:
| Q |
20 |
aaatgtgtttgggagtctcactatgatgctcaggttaagaagaattttcattaccgagctcaacaccgtttttcagatatgatgttaacattaagacgaa |
119 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| |||| ||||| || |
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| T |
23964160 |
aaatgtgtttgggagtctcgccatgatgctcaggttaagaagaattttcattatcgagctcaacacagtttccaagatatgatgtcaacagtaagagcaa |
23964259 |
T |
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| Q |
120 |
aacatgctaaaaagcctgaatgg |
142 |
Q |
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| T |
23964260 |
agcatgctagagatcctgaatgg |
23964282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 13899158 - 13899281
Alignment:
| Q |
19 |
aaaatgtgtttgggagtctcactatgatgctcaggttaagaagaattttcattaccgagctcaacaccgtttttcagatatgatgttaacattaagacga |
118 |
Q |
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|||||||||||||||||||| | ||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| || | ||||| | |
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| T |
13899158 |
aaaatgtgtttgggagtctcgccatgatgctcagcttaagaagaattttcattatcgagctcaacaccgtttccaagatatgatgtcaatagtaagagca |
13899257 |
T |
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| Q |
119 |
aaacatgctaaaaagcctgaatgg |
142 |
Q |
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| T |
13899258 |
aagcatgctagagatcctgaatgg |
13899281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 13569339 - 13569461
Alignment:
| Q |
20 |
aaatgtgtttgggagtctcactatgatgctcaggttaagaagaattttcattaccgagctcaacaccgtttttcagatatgatgttaacattaagacgaa |
119 |
Q |
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|||||||||||| |||||| | |||||||||| |||||||||||||||||||| ||||||| ||||||||| ||||||||||| |||| ||||| || |
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| T |
13569339 |
aaatgtgtttggaagtctccccatgatgctcatgttaagaagaattttcattatcgagctcgacaccgtttccaagatatgatgtcaacagtaagagcaa |
13569438 |
T |
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| Q |
120 |
aacatgctaaaaagcctgaatgg |
142 |
Q |
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| T |
13569439 |
agcatgctagagatcctgaatgg |
13569461 |
T |
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