View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_low_77 (Length: 236)
Name: NF5907_low_77
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_low_77 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 48385314 - 48385484
Alignment:
| Q |
16 |
aaaagtgcttcggaagtgaaaaacatgatgcaaacttcgattcaaacacactaagtgagtgaaactatacatttgcatgtgaaaatcaaaaacaacaaat |
115 |
Q |
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| T |
48385314 |
aaaagtgcgttggaagtgaaaaacatgatgcaaacttcgattcaaacacactaagtgagtgaaactatacatttgcatgtgaaaatcaaaaacaacaaat |
48385413 |
T |
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| Q |
116 |
cctacctatataagtagaatcaaatctaaaccaaacatatgagaatcaattttatagtttgatgatgaatt |
186 |
Q |
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| T |
48385414 |
cctacctatataagtagaatcaaatctaaaccaaacatatcagaatcaattttatactttgatgatgaatt |
48385484 |
T |
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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 48385508 - 48385555
Alignment:
| Q |
188 |
caaacctacgctaaatcaatatttccatttttaattttgtctctttctc |
236 |
Q |
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| T |
48385508 |
caaacctacactaaatcaatatttcca-ttttaattttctctctttctc |
48385555 |
T |
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