View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_low_8 (Length: 597)
Name: NF5907_low_8
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 151 - 304
Target Start/End: Original strand, 14472093 - 14472246
Alignment:
| Q |
151 |
tgctacaacaataaacataacatgaagatctcaaatgtccaaaccttgttcatagactcttccaaactgcgaatgtccacacgccttgctatgttcttcg |
250 |
Q |
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| T |
14472093 |
tgctacaacaataaacataacatgaagatctcaaatgtccaaaccttgttcatagactcttccaaactgcgaatgtccacacgccttgctatgttcttcg |
14472192 |
T |
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| Q |
251 |
ccgtaatcaacttgtcctcctttcaaataatagaacaattctctagccctaagg |
304 |
Q |
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| T |
14472193 |
ccgtaatcaacttgtcctcctttcaaataatagaacaattctctagccctaagg |
14472246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 366 - 488
Target Start/End: Original strand, 14472308 - 14472430
Alignment:
| Q |
366 |
taagataaaaattccatgaacttacctatcatagatgcttgttaaagaccctagatcaggaacaagaaccctttcatctttcttctctgctccagcaaaa |
465 |
Q |
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| T |
14472308 |
taagataaaaattccatgaacttacctatcatagatgcttgttaaagaccctagatcaggaacaagaaccctttcatctttcttctctgctccagcaaaa |
14472407 |
T |
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| Q |
466 |
tatgataaaccacctaatctctg |
488 |
Q |
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| T |
14472408 |
tatgataaaccacctaatctctg |
14472430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 14471960 - 14472015
Alignment:
| Q |
8 |
ccaacaaaatgaataggatgatcctcatcccattcaggataatgtcctgtgtatac |
63 |
Q |
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| T |
14471960 |
ccaacaaaatgaataggatgatcctcatcccattcaggataatgtcctgtgtatac |
14472015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 562 - 597
Target Start/End: Original strand, 14472504 - 14472539
Alignment:
| Q |
562 |
tgatgaatcattacccctttgccaaatccaaaaatt |
597 |
Q |
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| T |
14472504 |
tgatgaatcattacccctttgccaaatccaaaaatt |
14472539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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