View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_low_80 (Length: 223)
Name: NF5907_low_80
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_low_80 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 46687913 - 46687693
Alignment:
| Q |
2 |
aattggaacatagtaatactaatattcaaaataagaaaactaaaaatcaattttataataaaagtcttaaagtaaacttttcttgtgtgggaaaaaatat |
101 |
Q |
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| T |
46687913 |
aattggaacatagtactactaatattcaaaataagaaaacgaaaaatcaattttataataaaagtcttaaagtaaacttttcttgtgtgggaaaaaata- |
46687815 |
T |
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| Q |
102 |
aatataatgtacaaattgaaattgttaccaccaaatgaagatattaataagagaaatatcatctcatccacctattctacatatttc--atatgacccca |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
46687814 |
-atataatgtacaaattgaaattgttaccaccaaatgaagatattaataagagaaatatcatctcatccacctattctacatatttcatatatgacccca |
46687716 |
T |
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| Q |
200 |
cattcatgtcatttccttaaataa |
223 |
Q |
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|||| | ||||||||| ||||||| |
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| T |
46687715 |
cattta-gtcatttccctaaataa |
46687693 |
T |
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