View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5907_low_9 (Length: 541)
Name: NF5907_low_9
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_low_9 |
 | |
|
| [»] scaffold0608 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 10 - 522
Target Start/End: Original strand, 46925829 - 46926355
Alignment:
| Q |
10 |
gcagagacatttgatgtgttaggacgcgagttcgaacctaaaatttaatcatggcagtgaggatatttatttaaaagaaaaagatataaagaaaacaagt |
109 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
46925829 |
gcagagacatttgatgtgttaggacgtgagttcgaacctaaaatttaatcatggcagtgaggatatttatttaaaagaaaaagatagaaagaaaacaagt |
46925928 |
T |
|
| Q |
110 |
aaatgattcggggactttatttgctgaagtga-----------------cttaaagaatttactagaagactcagtctattcacatatatgtagtatatg |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46925929 |
aaatgattcggggactttatttgctgaagtgatttaggttttgaattggcttaaagaatttactagaagactcagtctattcacatatatgtagtatatg |
46926028 |
T |
|
| Q |
193 |
tttttctttcttcaaaatagtcaacattaatttgatttgaacctacattgtggaagtttatgccaaaattagatcattaaactaatattaattcaacttg |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46926029 |
tttttctttcttcaaaatagtcaacattaatttgatttgaacctacattgtggaagtttatgccaaaattagatcattaaactaatattaattcaacttg |
46926128 |
T |
|
| Q |
293 |
tgtatgaaggatcatgtataaattgggttgcaggcaaaggagagatgcatcaacacaatattcactcacattgagatcatcattttcaagaaacaatgga |
392 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46926129 |
tgtatgaaggatcatgtataaa---ggttgcaggcaaaggagagatgcatcaacacaatattcactcacattgagatcatcattttcaagaaacaatgga |
46926225 |
T |
|
| Q |
393 |
ctttgtaagttgtactcttgtttttctgttaacatgcttatccattcatgctctttgttcactccttactaaaataactaaaccaaactataagcttcca |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
46926226 |
ctttgtaagttgtactcttgtttttctgttaacatgcttatccattcatgctctttattcactccttactagaataactaaaccaaactataagcttcca |
46926325 |
T |
|
| Q |
493 |
ccaggaccttcccctcttccaatcataggg |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
46926326 |
ccaggaccttcccctcttccaatcataggg |
46926355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 472 - 522
Target Start/End: Original strand, 46933170 - 46933220
Alignment:
| Q |
472 |
aaaccaaactataagcttccaccaggaccttcccctcttccaatcataggg |
522 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46933170 |
aaaccaaactataagcttccaccaggaccttcccctcttccaatcataggg |
46933220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 400 - 522
Target Start/End: Complemental strand, 11107825 - 11107703
Alignment:
| Q |
400 |
agttgtactcttgtttttctgttaacatgcttatccattcatgctctttgttcactccttactaaaataactaaaccaaactataagcttccaccaggac |
499 |
Q |
| |
|
|||||||| |||||| || |||||||||| || |||||||| | |||| | ||| |||| | || ||| ||||||| |||||||||||||||||||| |
|
|
| T |
11107825 |
agttgtacacttgttcttgtgttaacatgtgcattcattcatgttttttgcttactacttaaaagaacaacaaaaccaacctataagcttccaccaggac |
11107726 |
T |
|
| Q |
500 |
cttcccctcttccaatcataggg |
522 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
11107725 |
cttcccctcttcccatcataggg |
11107703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 11108002 - 11107962
Alignment:
| Q |
275 |
taatattaattcaacttgtgtatgaaggatcatgtataaat |
315 |
Q |
| |
|
|||| |||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
11108002 |
taattttaattcaacttgtgtttgagggatcatgtataaat |
11107962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0608
Description:
Target: scaffold0608; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 400 - 522
Target Start/End: Complemental strand, 3264 - 3142
Alignment:
| Q |
400 |
agttgtactcttgtttttctgttaacatgcttatccattcatgctctttgttcactccttactaaaataactaaaccaaactataagcttccaccaggac |
499 |
Q |
| |
|
|||||||| |||||| || |||||||||| || |||||||| | |||| | ||| |||| | || ||| ||||||| |||||||||||||||||||| |
|
|
| T |
3264 |
agttgtacacttgttcttgtgttaacatgtgcattcattcatgttttttgcttactacttaaaagaacaacaaaaccaacctataagcttccaccaggac |
3165 |
T |
|
| Q |
500 |
cttcccctcttccaatcataggg |
522 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
3164 |
cttcccctcttcccatcataggg |
3142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 3441 - 3401
Alignment:
| Q |
275 |
taatattaattcaacttgtgtatgaaggatcatgtataaat |
315 |
Q |
| |
|
|||| |||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
3441 |
taattttaattcaacttgtgtttgagggatcatgtataaat |
3401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University