View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5908-Insertion-1 (Length: 1080)
Name: NF5908-Insertion-1
Description: NF5908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5908-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 664; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 9 - 834
Target Start/End: Original strand, 824207 - 825014
Alignment:
| Q |
9 |
ggtataaagctatgaagcacggacagtcctcagattagacgtgtcctaatatcatatatgtgtcgtgttagacatacgacacgacaccaacacattttat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
824207 |
ggtataaagctatgaagcacggacagtcctcggattagacgtgtcctaatatcatatatgtgtcgtgttagacatacgacacgacaccaacacattttat |
824306 |
T |
|
| Q |
109 |
tttctcaaattattaacagtgtcgacgtgtcgtgtccgatgtccgtgcttcataggtataaagtgtcaaactaaatccaaccttcaattaccattacaca |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
824307 |
tttctcaaattattaacagtgtcgacgtgtcatgtccgatgtccgtgcttcataggtataaagtgtcaaactaaatccaaccttcaattaccattacata |
824406 |
T |
|
| Q |
209 |
tgtgacttgagaaattgggatagctt-agttgcaacatccttcaagatgatattgcatggccaccctagatccaaccaaaatcgatttctatttccatta |
307 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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|
| T |
824407 |
tgtgacttgagaaattgggatagctttagttgcaacatccttcaagat---------------------atccaaccaaaatcgaattctatttccatta |
824485 |
T |
|
| Q |
308 |
ccattattccattgcagacctgnnnnnnntcctcctaaacaacgataattccacaacatgtagctaaacgtacaattgatctttggaatgttcttcaccc |
407 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
824486 |
ccattattccattgcagacctgaaaaaaatcctcctaaacaacgataattccacaacatgtagctaaacgtacaattgatctttggaatgttcttcaccc |
824585 |
T |
|
| Q |
408 |
aaaatgcatatgggttctttaacaaaaaccaaagttagtttccatgactcccattaaatagtactcctacctacatatatatcacataaataataatgaa |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
824586 |
aaaatgcatatgggttctttaacaaaaaccaaagttagtttccatgactcccattaaatagtactcctacctacatatatatcacataaata---atgaa |
824682 |
T |
|
| Q |
508 |
accaacatcctttagcgtttcaataataaacaaacttgttgggcaacaataatgttatgttattcgccttaaatgaaactgcattggtatggtgggaact |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
824683 |
accaacatcctttagcgtttcaataataaacaaacttcttgggcaacaataatgttatgctattcgccttaaatgaaactgcattggtatggtgggaact |
824782 |
T |
|
| Q |
608 |
aattaggagcaacatcacatgcttacattattacccgatcaaaatcaaaattcaaattttcaagaaaataaaaggggatattattaggaatataggtggg |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
824783 |
aattaggagcaacatcacatgcttacattattacccgatcaaaatcaaaattcaaattttctagaaaataaaaggggatattattaggaatataggtggg |
824882 |
T |
|
| Q |
708 |
ttggatagtaatttcattttattgtaataatcaaggcccaatccttttgaagaggcccttataacaataacaaaaccctaaaacacaaccgatt----ca |
803 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
824883 |
ttggatagtaatttcattttattgtaataatcaaggcccaatccttttgaagaggcccttataacaataacaaaaccctaaaacacaaccgattcatcca |
824982 |
T |
|
| Q |
804 |
tccttttcgcattac-aactaactcgttggac |
834 |
Q |
| |
|
|||||||||||| || |||||||||||||||| |
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|
| T |
824983 |
tccttttcgcatcacaaactaactcgttggac |
825014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 14465006 - 14465041
Alignment:
| Q |
19 |
tatgaagcacggacagtcctcagattagacgtgtcc |
54 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
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|
| T |
14465006 |
tatgaagcacggacactcctcagattagacgtgtcc |
14465041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 18513175 - 18513212
Alignment:
| Q |
18 |
ctatgaagcacggacagtcctcagattagacgtgtcct |
55 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
18513175 |
ctatgaagcacggacactcctcagattaggcgtgtcct |
18513212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 689 - 922
Target Start/End: Complemental strand, 21354058 - 21353823
Alignment:
| Q |
689 |
tattaggaatataggtgggttggatagtaattt---catttt---attgtaataatcaaggcccaatccttttgaagaggcccttataacaataacaaaa |
782 |
Q |
| |
|
|||||| |||||| ||| ||||||||||| ||| |||||| |||||||||||| ||||||||| |||||||||||||||| | ||||||| |
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|
| T |
21354058 |
tattagaaatatatgtgagttggatagtactttttgcattttttgattgtaataatccaggcccaattattttgaagaggccctt------aaaacaaaa |
21353965 |
T |
|
| Q |
783 |
ccctaaaa-cacaaccgattcatccttttcgcattacaactaactcgttggactggaatt--tggtgtctcactgagctc-acgccgccg--tgtcttcg |
876 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||| ||| ||||||||||| ||||||| | |||||||||| ||| ||||||||| |||||| |
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|
| T |
21353964 |
ccctaaaatcacaaccggttcatcctttttgcatcaca---aactcgttggattggaattcgtacagtctcactgaactcaacgccgccggagttcttcg |
21353868 |
T |
|
| Q |
877 |
tcggcatctacaaacagtaagaagctccatcatctttcttcctttc |
922 |
Q |
| |
|
|||||| | |||||||||||||| ||| |||| |||||||||||| |
|
|
| T |
21353867 |
tcggcagccacaaacagtaagaatctctgtcat-tttcttcctttc |
21353823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 35057001 - 35056964
Alignment:
| Q |
15 |
aagctatgaagcacggacagtcctcagattagacgtgt |
52 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||| |
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|
| T |
35057001 |
aagctatgaagcacggacactcctcagattaggcgtgt |
35056964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 38804590 - 38804647
Alignment:
| Q |
107 |
attttctcaaattattaacagtgtcgacgtgtcgtgtccgatgtccgtgcttcatagg |
164 |
Q |
| |
|
||||||| ||||||||| | |||||| ||||||||||||| ||||||||||||||||| |
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|
| T |
38804590 |
attttctgaaattattatccgtgtcggcgtgtcgtgtccggtgtccgtgcttcatagg |
38804647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 1433579 - 1433541
Alignment:
| Q |
17 |
gctatgaagcacggacagtcctcagattagacgtgtcct |
55 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
1433579 |
gctatgaagcacggacactcctcggattagacgtgtcct |
1433541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 30098350 - 30098293
Alignment:
| Q |
107 |
attttctcaaattattaacagtgtcgacgtgtc-gtgtccgatgtccgtgcttcatag |
163 |
Q |
| |
|
||||||||||||||||||| || ||| |||||| ||||||| |||||||||||||||| |
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|
| T |
30098350 |
attttctcaaattattaacggtttcgtcgtgtcagtgtccggtgtccgtgcttcatag |
30098293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 4206355 - 4206318
Alignment:
| Q |
102 |
attttattttctcaaattattaacagtgtcgacgtgtc |
139 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
4206355 |
attttattttctcaaattattaacggtgttgacgtgtc |
4206318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 32766872 - 32766909
Alignment:
| Q |
18 |
ctatgaagcacggacagtcctcagattagacgtgtcct |
55 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
32766872 |
ctatgaagcacggacactcctcagattagacgtatcct |
32766909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 39205904 - 39205848
Alignment:
| Q |
107 |
attttctcaaattattaacagtgtcgacgtgt-cgtgtccgatgtccgtgcttcatag |
163 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||| | | |||||||||||||| |
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|
| T |
39205904 |
attttctcaaattattagcagtgtcgacgtgtccgtgtctg-tatccgtgcttcatag |
39205848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 48450548 - 48450587
Alignment:
| Q |
16 |
agctatgaagcacggacagtcctcagattagacgtgtcct |
55 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
48450548 |
agctatgaagcacggacactcctcggattagacgtgtcct |
48450587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 2218347 - 2218309
Alignment:
| Q |
18 |
ctatgaagcacggacagtcctcagattagacgtgtccta |
56 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||| |
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|
| T |
2218347 |
ctatgaagcacggacactcctcagattaggcgtgtccta |
2218309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 22652108 - 22652070
Alignment:
| Q |
16 |
agctatgaagcacggacagtcctcagattagacgtgtcc |
54 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
22652108 |
agctatgaagcacggacactcctcggattagacgtgtcc |
22652070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 35990555 - 35990588
Alignment:
| Q |
102 |
attttattttctcaaattattaacagtgtcgacg |
135 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
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|
| T |
35990555 |
attttattttctcaaattattatcagtgtcgacg |
35990588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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