View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5908-Insertion-3 (Length: 935)

Name: NF5908-Insertion-3
Description: NF5908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5908-Insertion-3
NF5908-Insertion-3
[»] chr3 (18 HSPs)
chr3 (8-538)||(31296937-31297449)
chr3 (630-935)||(31297529-31297836)
chr3 (629-679)||(8400933-8400983)
chr3 (629-679)||(43334058-43334108)
chr3 (629-679)||(50823776-50823826)
chr3 (629-679)||(50852034-50852084)
chr3 (629-679)||(52545399-52545449)
chr3 (629-677)||(37330611-37330659)
chr3 (629-679)||(7417876-7417926)
chr3 (629-679)||(30534906-30534956)
chr3 (629-679)||(35198843-35198893)
chr3 (629-678)||(34824635-34824684)
chr3 (629-678)||(55468079-55468128)
chr3 (629-679)||(22855965-22856015)
chr3 (629-677)||(19872487-19872535)
chr3 (629-677)||(25910670-25910718)
chr3 (629-679)||(37454748-37454798)
chr3 (629-678)||(22371733-22371782)
[»] chr8 (15 HSPs)
chr8 (629-679)||(11404079-11404129)
chr8 (629-679)||(17095628-17095678)
chr8 (629-679)||(29767264-29767314)
chr8 (629-676)||(11909427-11909474)
chr8 (629-679)||(32296643-32296693)
chr8 (629-677)||(43288152-43288200)
chr8 (629-679)||(19723389-19723439)
chr8 (629-679)||(22711587-22711637)
chr8 (629-674)||(4840223-4840268)
chr8 (629-676)||(41553366-41553413)
chr8 (629-675)||(27879564-27879610)
chr8 (629-675)||(28019745-28019791)
chr8 (629-679)||(28739565-28739615)
chr8 (629-679)||(36261724-36261774)
chr8 (649-678)||(21355008-21355037)
[»] chr7 (12 HSPs)
chr7 (629-679)||(245268-245318)
chr7 (629-679)||(35109769-35109819)
chr7 (629-679)||(37095214-37095264)
chr7 (629-679)||(38265241-38265291)
chr7 (629-679)||(41151251-41151301)
chr7 (629-678)||(38405158-38405207)
chr7 (629-677)||(21577102-21577150)
chr7 (629-679)||(16059357-16059407)
chr7 (629-676)||(12472202-12472249)
chr7 (629-676)||(18116948-18116995)
chr7 (629-679)||(34721912-34721962)
chr7 (629-678)||(45278531-45278580)
[»] chr6 (4 HSPs)
chr6 (629-679)||(35163754-35163804)
chr6 (629-679)||(20685403-20685453)
chr6 (633-679)||(15070203-15070249)
chr6 (629-679)||(17948758-17948808)
[»] chr5 (4 HSPs)
chr5 (629-679)||(17064401-17064451)
chr5 (629-679)||(20983007-20983057)
chr5 (629-679)||(37976628-37976678)
chr5 (630-679)||(31673907-31673956)
[»] chr4 (14 HSPs)
chr4 (629-679)||(51066571-51066621)
chr4 (629-679)||(7173589-7173639)
chr4 (629-679)||(36192619-36192669)
chr4 (629-679)||(46494402-46494452)
chr4 (629-677)||(2570281-2570329)
chr4 (629-679)||(22304095-22304145)
chr4 (629-679)||(29576493-29576543)
chr4 (629-679)||(51713969-51714019)
chr4 (629-671)||(55231773-55231815)
chr4 (629-676)||(30970388-30970435)
chr4 (629-679)||(2294720-2294770)
chr4 (683-720)||(22423403-22423441)
chr4 (629-675)||(32139246-32139292)
chr4 (629-671)||(51066240-51066282)
[»] chr1 (13 HSPs)
chr1 (629-679)||(30054446-30054496)
chr1 (629-679)||(12025259-12025309)
chr1 (629-679)||(21090193-21090243)
chr1 (629-679)||(22024181-22024231)
chr1 (629-679)||(30370064-30370114)
chr1 (629-679)||(45324084-45324134)
chr1 (629-679)||(17015198-17015248)
chr1 (629-675)||(20014540-20014586)
chr1 (629-679)||(35618053-35618103)
chr1 (629-674)||(14498083-14498128)
chr1 (629-678)||(30850844-30850893)
chr1 (634-679)||(35371754-35371799)
chr1 (629-679)||(33762544-33762594)
[»] chr2 (17 HSPs)
chr2 (629-676)||(2754055-2754102)
chr2 (629-679)||(17136465-17136515)
chr2 (629-679)||(45136974-45137024)
chr2 (629-674)||(2098830-2098875)
chr2 (634-679)||(6672802-6672847)
chr2 (629-678)||(10745236-10745285)
chr2 (629-676)||(2357080-2357127)
chr2 (629-676)||(26690235-26690282)
chr2 (629-679)||(30372684-30372734)
chr2 (629-679)||(36380136-36380186)
chr2 (629-679)||(36836333-36836383)
chr2 (629-677)||(44650473-44650521)
chr2 (629-675)||(558443-558489)
chr2 (629-679)||(13047160-13047210)
chr2 (629-679)||(21637975-21638025)
chr2 (629-679)||(40156118-40156168)
chr2 (629-677)||(25987665-25987714)
[»] scaffold0021 (1 HSPs)
scaffold0021 (634-679)||(107700-107745)


Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 8 - 538
Target Start/End: Original strand, 31296937 - 31297449
Alignment:
Q  8 atggattacatagattggaagttaggttaagcaaattgaatgaagctaaatctgagaaaccaattgtttcacataatattgatttgtttaagatttgggg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31296937 atggattacatagattggaagttaggttaagcaaattgaatgaagctaaatctgagaaaccaattgtttcacataatattgatttgtttaagatttgggg 31297036  T
Q  108 taatcaacctannnnnnngggtttgagttcttccaatgatgcacattctattcaggttgttcgagtttattcgtggaaggttaatttgaagaatggtaca 207  Q
    |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31297037 taatcaacctatttttttgggtttgagttcttccaatgatgcacattctattcaggttgttcgagtttattcgtggaaggttaatttgaagaatggtaca 31297136  T
Q  208 aattcaaattcagattcaaattcattgcattctcaacctgttaatcctaatgatgaacaagaacaatcgaagcttgatgccgcgaatagaagaaagtatc 307  Q
    ||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31297137 aa------------------ttcattgcattctcaacctgttaatcctaatgatgaacaagaacaatcgaagcttgatgccgcgaatagaagaaagtatc 31297218  T
Q  308 gtcctttgacgtttctagccggtgtgatttttgggacagtttgtgttgtattggtgacatttgtggttttgtttatgtgggtgattttctttcataagca 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||    
T  31297219 gtcctttgacgtttctagccggtgtgatttttgggacagtttgtgttgtattggtgacatttgtggttttgtttatgtgggtgatatttttccataagca 31297318  T
Q  408 tgacgaagagtctcttgctaaattacctgaacatccttctgatgtaaggtatgaaaggattgatgttgctgttgaaaagaatgctgaagatcatgatgaa 507  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31297319 tgaagaagagtctcttgctaaattacctgaacatccttctgatgtaaggtatgaaaggattgatgttgctgttgaaaagaatgctgaagatcatgatgaa 31297418  T
Q  508 caacattagaacaaaataggaggtgatgtga 538  Q
    |||||||||||||||||||||||||||||||    
T  31297419 caacattagaacaaaataggaggtgatgtga 31297449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 630 - 935
Target Start/End: Original strand, 31297529 - 31297836
Alignment:
Q  630 ttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggcgcgtacaaaagtatttacatttacctcctccaaaggtactagtatggctc 729  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  31297529 ttagggtgagggcatggttccccagtccaaggcaaggaagaccttcaggcgcgtacaaaagtatttacatttacctcctccaaaggctctagtatggctc 31297628  T
Q  730 gaacacatgactttcgggtccaagacatgttgttttagaacaagcctttggagttcttttgtgtttatatttaatgtggaaaattcttttgtaggagatt 829  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31297629 gaacacgtgattttcgggtccaagacatgttgttttagaacaagcctttggagttcttttgtgtttatatttaatgtggaaaattcttttgtaggagatt 31297728  T
Q  830 atgatattgtagatccattgtaaacaaaaccttgtaaagtatttgtacttcctgattgggaaccacttttcattgattaaatct--gttataaatgtttg 927  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  31297729 atgatattgtagatccattgtaaacaaaaccttgtaaagtatttgtacttcctgattgggaaccacttttcattgattaaatcttgtttataaatgtttg 31297828  T
Q  928 cactttga 935  Q
    ||||||||    
T  31297829 cactttga 31297836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 8400983 - 8400933
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  8400983 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggc 8400933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 43334058 - 43334108
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  43334058 tttagggtgaggggatggtaccccagtccaaggcagggaagaccttcgggc 43334108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 50823826 - 50823776
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  50823826 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggc 50823776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 50852034 - 50852084
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  50852034 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggc 50852084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 52545449 - 52545399
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  52545449 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggc 52545399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 629 - 677
Target Start/End: Original strand, 37330611 - 37330659
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgg 677  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  37330611 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgg 37330659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 7417926 - 7417876
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| |||||||||||||||| ||||||||||||||    
T  7417926 tttagggtgaggggatggtgccccagtccaaggcagtgaagaccttcgggc 7417876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 30534906 - 30534956
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| |||||||||||||||||||||| ||||||||    
T  30534906 tttagggtgaggggatggtaccccagtccaaggcagggaagatcttcgggc 30534956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 35198893 - 35198843
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| | |||||||||||||||||||||||||||||    
T  35198893 tttagggtgaggggatggtgctccagtccaaggcagggaagaccttcgggc 35198843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 629 - 678
Target Start/End: Complemental strand, 34824684 - 34824635
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcggg 678  Q
    ||||||||||||| ||||| |||||||||||||| |||||||||||||||    
T  34824684 tttagggtgaggggatggtgccccagtccaaggccgggaagaccttcggg 34824635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 629 - 678
Target Start/End: Complemental strand, 55468128 - 55468079
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcggg 678  Q
    ||||||||||||| ||||| |||||||||||||||| |||||||||||||    
T  55468128 tttagggtgaggggatggtgccccagtccaaggcagagaagaccttcggg 55468079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 22856015 - 22855965
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| | |||||||||||||||||||||||| ||||    
T  22856015 tttagggtgaggggatggtgctccagtccaaggcagggaagacctttgggc 22855965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 629 - 677
Target Start/End: Original strand, 19872487 - 19872535
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgg 677  Q
    |||||| |||||| ||||| |||||||||||| ||||||||||||||||    
T  19872487 tttaggatgaggggatggtgccccagtccaagacagggaagaccttcgg 19872535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 629 - 677
Target Start/End: Original strand, 25910670 - 25910718
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgg 677  Q
    ||||||||||||| ||||| || ||||||||||||||||||| ||||||    
T  25910670 tttagggtgaggggatggtgcctcagtccaaggcagggaagatcttcgg 25910718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 37454748 - 37454798
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| ||||| || |||| |||||||||||||||||    
T  37454748 tttagggtgaggggatggtgccccaatctaaggtagggaagaccttcgggc 37454798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 629 - 678
Target Start/End: Original strand, 22371733 - 22371782
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcggg 678  Q
    ||||||||||||| ||||| |||||||| || |||||||||| |||||||    
T  22371733 tttagggtgaggggatggtgccccagtctaaagcagggaagatcttcggg 22371782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 11404129 - 11404079
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  11404129 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggc 11404079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 17095678 - 17095628
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  17095678 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggc 17095628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 29767314 - 29767264
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  29767314 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggc 29767264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 629 - 676
Target Start/End: Original strand, 11909427 - 11909474
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcg 676  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  11909427 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcg 11909474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 32296643 - 32296693
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| ||||| |||||||||||||||||||||||||    
T  32296643 tttagggtgaggggatggtgccccaatccaaggcagggaagaccttcgggc 32296693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 629 - 677
Target Start/End: Complemental strand, 43288200 - 43288152
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgg 677  Q
    ||||||||||||| ||||| | |||||||||||||||||||||||||||    
T  43288200 tttagggtgaggggatggtgctccagtccaaggcagggaagaccttcgg 43288152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 19723439 - 19723389
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| |||||||||||||||||||||| ||| ||||    
T  19723439 tttagggtgaggggatggtgccccagtccaaggcagggaagatctttgggc 19723389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 22711637 - 22711587
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    |||||| |||||| ||||| ||||||||||||||| |||||||||||||||    
T  22711637 tttaggatgaggggatggtgccccagtccaaggcaaggaagaccttcgggc 22711587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 629 - 674
Target Start/End: Complemental strand, 4840268 - 4840223
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagacctt 674  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||||||    
T  4840268 tttagggtgaggggatggtgccctagtccaaggcagggaagacctt 4840223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 629 - 676
Target Start/End: Complemental strand, 41553413 - 41553366
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcg 676  Q
    ||||||||||||| ||||| | |||||| |||||||||||||||||||    
T  41553413 tttagggtgaggggatggtgctccagtctaaggcagggaagaccttcg 41553366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 629 - 675
Target Start/End: Original strand, 27879564 - 27879610
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttc 675  Q
    ||||||||||||| ||||| ||||||||||||| |||||||| ||||    
T  27879564 tttagggtgaggggatggtgccccagtccaaggtagggaagatcttc 27879610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 629 - 675
Target Start/End: Original strand, 28019745 - 28019791
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttc 675  Q
    ||||||||||||| ||||| ||||||||||||| |||||||| ||||    
T  28019745 tttagggtgaggggatggtgccccagtccaaggtagggaagatcttc 28019791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 28739565 - 28739615
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| |  |||||||||| |||||||||||||||||    
T  28739565 tttagggtgaggggatggtgctgcagtccaaggtagggaagaccttcgggc 28739615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 36261774 - 36261724
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    |||| |||||||| ||||| ||||||| |||||||||||||| ||||||||    
T  36261774 tttaaggtgaggggatggtgccccagttcaaggcagggaagatcttcgggc 36261724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 678
Target Start/End: Original strand, 21355008 - 21355037
Alignment:
Q  649 ccccagtccaaggcagggaagaccttcggg 678  Q
    ||||||||||||||||||||||||||||||    
T  21355008 ccccagtccaaggcagggaagaccttcggg 21355037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 245268 - 245318
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  245268 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggc 245318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 35109819 - 35109769
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  35109819 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggc 35109769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 37095214 - 37095264
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  37095214 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggc 37095264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 38265241 - 38265291
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  38265241 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggc 38265291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 41151301 - 41151251
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  41151301 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggc 41151251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 629 - 678
Target Start/End: Original strand, 38405158 - 38405207
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcggg 678  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  38405158 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcggg 38405207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 629 - 677
Target Start/End: Original strand, 21577102 - 21577150
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgg 677  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  21577102 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgg 21577150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 16059357 - 16059407
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| ||||||||||||| |||||||||||||||||    
T  16059357 tttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggc 16059407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 629 - 676
Target Start/End: Complemental strand, 12472249 - 12472202
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcg 676  Q
    ||||||||||||| ||||| |||||||||||| |||||||||||||||    
T  12472249 tttagggtgaggggatggtaccccagtccaagacagggaagaccttcg 12472202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 629 - 676
Target Start/End: Original strand, 18116948 - 18116995
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcg 676  Q
    ||||||||||||| ||||| |||||||||||||||||||||| |||||    
T  18116948 tttagggtgaggggatggtgccccagtccaaggcagggaagatcttcg 18116995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 34721962 - 34721912
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| ||| ||||||||||||||||| |||||||||    
T  34721962 tttagggtgaggggatggtgcccgagtccaaggcagggaagtccttcgggc 34721912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 629 - 678
Target Start/End: Complemental strand, 45278580 - 45278531
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcggg 678  Q
    ||||||||||||| ||||| | ||||||||||||||||||||| ||||||    
T  45278580 tttagggtgaggggatggtgctccagtccaaggcagggaagacattcggg 45278531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 35163754 - 35163804
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  35163754 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggc 35163804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 20685453 - 20685403
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    |||||||||| || ||||| |||||||||||||||||||||||||||||||    
T  20685453 tttagggtgaagggatggtgccccagtccaaggcagggaagaccttcgggc 20685403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 633 - 679
Target Start/End: Complemental strand, 15070249 - 15070203
Alignment:
Q  633 gggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  15070249 gggtgaggggatggtgccccagtctaaggcagggaagaccttcgggc 15070203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 17948808 - 17948758
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    |||| |||||||| |||||  ||||||||||| ||||||||||||||||||    
T  17948808 tttaaggtgaggggatggtgtcccagtccaagacagggaagaccttcgggc 17948758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 17064451 - 17064401
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  17064451 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggc 17064401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 20983007 - 20983057
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| ||||||||||||||||||||||| |||||||    
T  20983007 tttagggtgaggggatggtgccccagtccaaggcagggaagactttcgggc 20983057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 37976678 - 37976628
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| ||||||| ||||||||| || ||||||||||    
T  37976678 tttagggtgaggggatggtgccccagttcaaggcaggaaaaaccttcgggc 37976628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 630 - 679
Target Start/End: Complemental strand, 31673956 - 31673907
Alignment:
Q  630 ttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||  |||| ||||||||||||||||||| |||||| ||||    
T  31673956 ttagggtgaggggttggtgccccagtccaaggcagggaggaccttagggc 31673907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 51066621 - 51066571
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  51066621 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggc 51066571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 7173589 - 7173639
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||||||||||    
T  7173589 tttagggtgaggggatggtgccccagtccaacgcagggaagaccttcgggc 7173639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 36192669 - 36192619
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| ||||||||||||| |||||||||||||||||    
T  36192669 tttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggc 36192619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 46494402 - 46494452
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| ||||||||||||| |||||||||||||||||    
T  46494402 tttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggc 46494452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 629 - 677
Target Start/End: Complemental strand, 2570329 - 2570281
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgg 677  Q
    ||||||||||||| ||||| |||||||||||||||||||||| ||||||    
T  2570329 tttagggtgaggggatggtgccccagtccaaggcagggaagatcttcgg 2570281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 22304095 - 22304145
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||| | ||||| ||||||||||||| |||||||||||||||||    
T  22304095 tttagggtgagaggatggtgccccagtccaaggtagggaagaccttcgggc 22304145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 29576543 - 29576493
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    |||||||||||||  |||| ||||| |||||||||||||||||||||||||    
T  29576543 tttagggtgagggggtggtgccccaatccaaggcagggaagaccttcgggc 29576493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 51713969 - 51714019
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| ||||||| ||| |||||||||||||||||||    
T  51713969 tttagggtgaggggatggtgccccagttcaaagcagggaagaccttcgggc 51714019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 671
Target Start/End: Complemental strand, 55231815 - 55231773
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagac 671  Q
    ||||||||||||| ||||| |||||||||||||||||||||||    
T  55231815 tttagggtgaggggatggtgccccagtccaaggcagggaagac 55231773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 629 - 676
Target Start/End: Original strand, 30970388 - 30970435
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcg 676  Q
    ||||||||||||| ||||| |||||||| |||| ||||||||||||||    
T  30970388 tttagggtgaggggatggtgccccagtctaaggtagggaagaccttcg 30970435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 2294720 - 2294770
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| |||||||| ||||||| |||||| |||||||    
T  2294720 tttagggtgaggggatggtgccccagtctaaggcagtgaagactttcgggc 2294770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 683 - 720
Target Start/End: Complemental strand, 22423441 - 22423403
Alignment:
Q  683 tacaaaagtatttacatttacct-cctccaaaggtacta 720  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  22423441 tacaaaagtatttacatttacctccctccaaaggtacta 22423403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 629 - 675
Target Start/End: Complemental strand, 32139292 - 32139246
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttc 675  Q
    |||||||||| || ||||| |||||||||||||||| ||||||||||    
T  32139292 tttagggtgaagggatggtgccccagtccaaggcagagaagaccttc 32139246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 629 - 671
Target Start/End: Complemental strand, 51066282 - 51066240
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagac 671  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||    
T  51066282 tttagggtgaggggatggtgccccagttcaaggcagggaagac 51066240  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 30054446 - 30054496
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  30054446 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggc 30054496  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 12025309 - 12025259
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    |||||||||||||  |||| |||||||||||||||||||||||||||||||    
T  12025309 tttagggtgagggggtggtgccccagtccaaggcagggaagaccttcgggc 12025259  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 21090243 - 21090193
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||||||||||    
T  21090243 tttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggc 21090193  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 22024231 - 22024181
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| |||||||||||||||| ||||||||||||||    
T  22024231 tttagggtgaggggatggtgccccagtccaaggcagagaagaccttcgggc 22024181  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 30370064 - 30370114
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    |||| |||||||| ||||| |||||||||||||||||||||||||||||||    
T  30370064 tttaaggtgaggggatggtgccccagtccaaggcagggaagaccttcgggc 30370114  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 45324134 - 45324084
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||||||||||    
T  45324134 tttagggtgaggggatggtgccccagtccaaagcagggaagaccttcgggc 45324084  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 17015248 - 17015198
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    |||||| |||||| ||||| ||||||||||| |||||||||||||||||||    
T  17015248 tttaggatgaggggatggtgccccagtccaaagcagggaagaccttcgggc 17015198  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 675
Target Start/End: Complemental strand, 20014586 - 20014540
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttc 675  Q
    ||||||||||||| ||||| || ||||||||||||||||||||||||    
T  20014586 tttagggtgaggggatggtgcctcagtccaaggcagggaagaccttc 20014540  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 35618103 - 35618053
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| ||||||||||| ||| |||||||||||||||    
T  35618103 tttagggtgaggggatggtaccccagtccaaagcaaggaagaccttcgggc 35618053  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 629 - 674
Target Start/End: Original strand, 14498083 - 14498128
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagacctt 674  Q
    ||||||||||||| ||||  ||||||||||||||||||||||||||    
T  14498083 tttagggtgaggggatggcgccccagtccaaggcagggaagacctt 14498128  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 629 - 678
Target Start/End: Original strand, 30850844 - 30850893
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcggg 678  Q
    ||||||||||||| ||||| |||||||||||| |||| ||||||||||||    
T  30850844 tttagggtgaggggatggtgccccagtccaagacaggaaagaccttcggg 30850893  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 634 - 679
Target Start/End: Original strand, 35371754 - 35371799
Alignment:
Q  634 ggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    |||||||| ||||| |||||||||||||||||||||| ||||||||    
T  35371754 ggtgaggggatggtgccccagtccaaggcagggaagaacttcgggc 35371799  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 33762544 - 33762594
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||| | |||||||||||||||||||| || |||||||    
T  33762544 tttagggtgaggggatgatgccccagtccaaggcagggaaaactttcgggc 33762594  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 629 - 676
Target Start/End: Original strand, 2754055 - 2754102
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcg 676  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  2754055 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcg 2754102  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 17136515 - 17136465
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  17136515 tttagggtgaggggatggtgccccagtccaaggcggggaagaccttcgggc 17136465  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 45136974 - 45137024
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    |||||||||| || ||||| |||||||||||||||||||||||||||||||    
T  45136974 tttagggtgaagggatggtgccccagtccaaggcagggaagaccttcgggc 45137024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 629 - 674
Target Start/End: Original strand, 2098830 - 2098875
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagacctt 674  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||    
T  2098830 tttagggtgaggggatggtgccccagtccaaggcagggaagacctt 2098875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 634 - 679
Target Start/End: Original strand, 6672802 - 6672847
Alignment:
Q  634 ggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||    
T  6672802 ggtgaggggatggtgccccagtccaaggcagggaagaccttcgggc 6672847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 629 - 678
Target Start/End: Original strand, 10745236 - 10745285
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcggg 678  Q
    ||||||||||||| ||||| |||||||||||||||||||| |||||||||    
T  10745236 tttagggtgaggggatggtgccccagtccaaggcagggaataccttcggg 10745285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 629 - 676
Target Start/End: Original strand, 2357080 - 2357127
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcg 676  Q
    ||||||||||||| ||||| ||||||||||||||| ||||||||||||    
T  2357080 tttagggtgaggggatggtgccccagtccaaggcatggaagaccttcg 2357127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 629 - 676
Target Start/End: Complemental strand, 26690282 - 26690235
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcg 676  Q
    ||||||||||||| ||||| || |||||||||||||||||||||||||    
T  26690282 tttagggtgaggggatggtgcctcagtccaaggcagggaagaccttcg 26690235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 30372684 - 30372734
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| ||||||| ||||||| |||||||||||||||    
T  30372684 tttagggtgagggtatggtaccccagttcaaggcatggaagaccttcgggc 30372734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 36380136 - 36380186
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| || |||||||||| |||||||||||||||||    
T  36380136 tttagggtgaggggatggtgcctcagtccaaggtagggaagaccttcgggc 36380186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 36836333 - 36836383
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    |||| |||||||| ||||| |||||||||||||||||||||| ||||||||    
T  36836333 tttaaggtgaggggatggtgccccagtccaaggcagggaagatcttcgggc 36836383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 629 - 677
Target Start/End: Complemental strand, 44650521 - 44650473
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgg 677  Q
    ||||||||||||| ||||| |||| ||||||||||||||||| ||||||    
T  44650521 tttagggtgaggggatggtgccccggtccaaggcagggaagatcttcgg 44650473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 629 - 675
Target Start/End: Original strand, 558443 - 558489
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttc 675  Q
    ||||||||||||| ||||| ||||| ||||||| |||||||||||||    
T  558443 tttagggtgaggggatggtgccccattccaaggaagggaagaccttc 558489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 629 - 679
Target Start/End: Original strand, 13047160 - 13047210
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| | |||||||||||||||||||| ||| ||||    
T  13047160 tttagggtgaggggatggtgctccagtccaaggcagggaagatctttgggc 13047210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 21638025 - 21637975
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    ||||||||||||| ||||| ||| |||||||||||| ||||||||| ||||    
T  21638025 tttagggtgaggggatggtgccctagtccaaggcagagaagacctttgggc 21637975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 629 - 679
Target Start/End: Complemental strand, 40156168 - 40156118
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    |||| |||||||| ||||| ||||||| ||||| |||||||||||||||||    
T  40156168 tttatggtgaggggatggtgccccagttcaaggtagggaagaccttcgggc 40156118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 629 - 677
Target Start/End: Original strand, 25987665 - 25987714
Alignment:
Q  629 tttagggtgagggcatggttccccagtccaaggcaggg-aagaccttcgg 677  Q
    ||||||||||||| ||||| |||||| ||||||||||| |||||||||||    
T  25987665 tttagggtgaggggatggtgccccagaccaaggcagggaaagaccttcgg 25987714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 634 - 679
Target Start/End: Original strand, 107700 - 107745
Alignment:
Q  634 ggtgagggcatggttccccagtccaaggcagggaagaccttcgggc 679  Q
    |||||||| ||||| |||||||||||||||||| ||||||||||||    
T  107700 ggtgaggggatggtgccccagtccaaggcagggtagaccttcgggc 107745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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