View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5908-Insertion-6 (Length: 1100)
Name: NF5908-Insertion-6
Description: NF5908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5908-Insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 679 - 895
Target Start/End: Complemental strand, 10607062 - 10606845
Alignment:
| Q |
679 |
aacatttgatttgctctttctaaaacatggttgttatctcttgcacttgttgccagagcctcaagtttcgactttttcaaatgctccacaaaattgctcc |
778 |
Q |
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| T |
10607062 |
aacatttgatttgctctttctaaaacatggttgttatctcttgcacttgttgccagagcctcaagtttcgactttttcatatgctccacaaaattgctcc |
10606963 |
T |
|
| Q |
779 |
aaacctctccgattgagttgtagaaaactgttgaaaatgtaaattagttgatgtactcaaaatgtaagttatctgttcatgtctcattttcctaggg-ca |
877 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
10606962 |
aaacctctccgattgagttgtagaaaactgttgaaaatgtaaattagttgatgtactcaaaatgtaagttatctgttcatgtctcattttccttgggcca |
10606863 |
T |
|
| Q |
878 |
ttagcaagaactaaaacg |
895 |
Q |
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||||||| |||| ||||| |
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| T |
10606862 |
ttagcaataactcaaacg |
10606845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 214 - 316
Target Start/End: Original strand, 44003273 - 44003375
Alignment:
| Q |
214 |
ttagaagtacctgttctcattttaattacttactcatc-aaggaaaaacttgtactatatttgatatgtttcaaactttgcacctatttttaccttcagc |
312 |
Q |
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|||||||||| |||||||||||||||||||| ||| || |||| |||| | ||||||| |||| ||||||||||||||||| |||||||||||||| ||| |
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| T |
44003273 |
ttagaagtacatgttctcattttaattactttctcttcgaagggaaaa-tggtactatgtttggtatgtttcaaactttgcccctatttttacctttagc |
44003371 |
T |
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| Q |
313 |
caca |
316 |
Q |
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|||| |
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| T |
44003372 |
caca |
44003375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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