View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5908_high_1 (Length: 683)

Name: NF5908_high_1
Description: NF5908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5908_high_1
NF5908_high_1
[»] chr3 (1 HSPs)
chr3 (13-663)||(47192287-47192937)


Alignment Details
Target: chr3 (Bit Score: 651; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 13 - 663
Target Start/End: Complemental strand, 47192937 - 47192287
Alignment:
Q  13 aatattgtgagaatctcttccattggccaacaacgtcttaggaaaacaatcatatgtagcaacaccattgaatttgaattgaacagctttgcatttttca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47192937 aatattgtgagaatctcttccattggccaacaacgtcttaggaaaacaatcatatgtagcaacaccattgaatttgaattgaacagctttgcatttttca 47192838  T
Q  113 caaagatccaaacacaacttttgacattgcttcaagcttgtcacttttgctacatacaaatcatagccatacaactccatgttttgaagatgaagaaaac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47192837 caaagatccaaacacaacttttgacattgcttcaagcttgtcacttttgctacatacaaatcatagccatacaactccatgttttgaagatgaagaaaac 47192738  T
Q  213 cgaaatcctcaacgcgagcactgtcgcaagaaagatcagcaggtttaaactcaggctcacacccttgtgtccaatcattacgattcttcaacttgtaacc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47192737 cgaaatcctcaacgcgagcactgtcgcaagaaagatcagcaggtttaaactcaggctcacacccttgtgtccaatcattacgattcttcaacttgtaacc 47192638  T
Q  313 tttcaaacaataacatgttcttccattaacaggatcataactacacatgctattttctccacaaataccatgaacctcacatggttcagcaatagcttgc 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47192637 tttcaaacaataacatgttcttccattaacaggatcataactacacatgctattttctccacaaataccatgaacctcacatggttcagcaatagcttgc 47192538  T
Q  413 catgaaacttcccatgtcttagttttatcattgaagctataaacacgtgggttaccatcatgatccattttgagtaatctatgaagtttctttggataat 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47192537 catgaaacttcccatgtcttagttttatcattgaagctataaacacgtgggttaccatcatgatccattttgagtaatctatgaagtttctttggataat 47192438  T
Q  513 caatggtgacaaattggtatgcatcagaggacatgaaatggccaaaggaatcgagtagcgcgattttagtaacattataagttgatcttcctgcatcaac 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47192437 caatggtgacaaattggtatgcatcagaggacatgaaatggccaaaggaatcgagtagcgcgattttagtaacattataagttgatcttcctgcatcaac 47192338  T
Q  613 aggtaatacccaaggtgatggccaatagacactagataacaaaggactttt 663  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47192337 aggtaatacccaaggtgatggccaatagacactagataacaaaggactttt 47192287  T

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