View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5908_low_11 (Length: 267)
Name: NF5908_low_11
Description: NF5908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5908_low_11 |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: scaffold0227 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 14 - 263
Target Start/End: Original strand, 17401 - 17650
Alignment:
| Q |
14 |
agaagattattgagattgtccatttgatgcatgatttgacgctgaccacgtgcaatgccggatatctgatagcacatagcagttaagtgaatcaaataag |
113 |
Q |
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| T |
17401 |
agaagattattgagattgtccatttgatgcatgatttgacgctgaccacgtgcaatgccggatatctgatagcacatagcagttaagtgaatcaaataag |
17500 |
T |
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| Q |
114 |
acaacgcggaagtgattccgaagtcatacaccttgcttataataacagcactggacttgcaccagttactggtcacagaatacaaatnnnnnnnccagtt |
213 |
Q |
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| T |
17501 |
acaacgcggaagtgattccgaagtcatacaccttgcttataataacagcactggacttgcaccagttactggtcacagaatacaaataaaaaaaccagtt |
17600 |
T |
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| Q |
214 |
taaaattttaaacatctttaattatttgtattcagcaagaataatctacc |
263 |
Q |
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| T |
17601 |
taaaattttaaacatctttaattatttgtattcagcaataataatttacc |
17650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 28079477 - 28079289
Alignment:
| Q |
14 |
agaagattattgagattgtccatttgatgcatgatttgacgctgaccacgtgcaatgccggatatctgatagcacatagcagttaagtgaatcaaataag |
113 |
Q |
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| T |
28079477 |
agaagattattgagattgtccatttgatgcatgatttgacgttgaccacgtgcaatgccagatatctgataacacatagcagttaagtgaatcaaataag |
28079378 |
T |
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| Q |
114 |
ac--aacgcggaagtgattccgaagtcatacaccttgcttataataacagcactggacttgcaccagttactggtcacagaatacaaat |
200 |
Q |
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| T |
28079377 |
acataatgcggcactgattccaaagtcatacaccctgcttataataacagcaccggacttgcaccagttactggtcacagaatacaaat |
28079289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 28079256 - 28079208
Alignment:
| Q |
217 |
aattttaaacatctttaattatttgtattcagcaagaataatctaccca |
265 |
Q |
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|||||| ||||||||||||| |||||||||||| | |||||| |||||| |
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| T |
28079256 |
aattttgaacatctttaattgtttgtattcagccaaaataatttaccca |
28079208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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